Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b03r
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23646-10|AAA28037.2|  242|Caenorhabditis elegans Hypothetical p...    28   2.9  
AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    27   8.9  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        27   8.9  

>L23646-10|AAA28037.2|  242|Caenorhabditis elegans Hypothetical
           protein F44E2.8 protein.
          Length = 242

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 185 DTQFSLRKRLVY*STILSLNVNTSLKYP-MVIIESLEENP 301
           DT F+      Y ST +  +VN SLKYP  V++++++  P
Sbjct: 177 DTYFAAGANAKYTSTWVDRHVNQSLKYPENVVVDNVQYLP 216


>AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical
           protein Y69E1A.6 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 316 IQLTKGIFLKTFYNYHGVF 260
           I +TK  FL TFY+ HG F
Sbjct: 9   IDVTKPTFLLTFYSIHGTF 27


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 56   TRLIKLV*SLKVTRMGRKKTINNYKSNGKTFDFQKKLL 169
            T  I L   LK+T MG+++ +++ +    T D + +LL
Sbjct: 1439 TVTIPLEKDLKITVMGKRRILSDQEIGSTTIDLENRLL 1476


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 56   TRLIKLV*SLKVTRMGRKKTINNYKSNGKTFDFQKKLL 169
            T  I L   LK+T MG+++ +++ +    T D + +LL
Sbjct: 1439 TVTIPLEKDLKITVMGKRRILSDQEIGSTTIDLENRLL 1476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,514,742
Number of Sequences: 27780
Number of extensions: 140739
Number of successful extensions: 238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)