Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18b03f
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0110 + 20212221-20214011,20214072-20214368                       27   6.5  
09_06_0180 - 21385655-21386017,21386399-21386623,21386859-21387305     27   8.7  

>11_06_0110 + 20212221-20214011,20214072-20214368
          Length = 695

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +1

Query: 157 NLPKGFSSRLSIITMGYFNEVLT----FKLKIVD*YTNLFLRLNCV 282
           NLPK      S++T+  FN  +T     ++ ++   TNL+L  NC+
Sbjct: 374 NLPKLVGRLTSLVTLDLFNNNITGQVPSEIGMLTNLTNLYLHYNCL 419


>09_06_0180 - 21385655-21386017,21386399-21386623,21386859-21387305
          Length = 344

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 106 YCHCYLSRFDLLKIIRYN 159
           Y   Y S FDLLK IR+N
Sbjct: 82  YLRSYASEFDLLKCIRFN 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,731,084
Number of Sequences: 37544
Number of extensions: 152092
Number of successful extensions: 284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)