Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18a24f
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 30 1.8
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 30 1.8
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 30 1.8
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 29 2.4
01_06_0995 + 33661367-33661380,33661729-33661826,33662059-336622... 29 2.4
01_06_0994 + 33653055-33653144,33653219-33653310,33653483-336535... 29 2.4
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 29 3.2
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 29 4.2
01_06_0998 + 33685051-33685143,33685231-33685322,33685490-336855... 29 4.2
03_06_0136 + 31933843-31934715,31934906-31935021,31935233-319354... 28 7.4
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 27 9.7
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 27 9.7
08_02_0648 - 19694538-19696569,19697151-19697998 27 9.7
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958... 27 9.7
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 223 LKGSGSW*EQYQRTVGTIDSRWV 155
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = +3
Query: 360 LRQGCEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYF 470
L GC+ N C R KYP C P C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 223 LKGSGSW*EQYQRTVGTIDSRWV 155
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 178 GTIDSRWVGILQFGPGWGA 122
G + +RW G+ Q G GWG+
Sbjct: 222 GPVPARWKGVCQVGEGWGS 240
>01_06_0995 +
33661367-33661380,33661729-33661826,33662059-33662214,
33663307-33663926,33664020-33664090,33664176-33664427,
33664494-33664611,33664715-33664886,33664970-33665511
Length = 680
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 178 GTIDSRWVGILQFGPGWGA 122
G + +RW G+ Q G GWG+
Sbjct: 104 GPVPARWKGVCQVGEGWGS 122
>01_06_0994 +
33653055-33653144,33653219-33653310,33653483-33653580,
33653758-33653913,33654009-33654628,33654721-33654794,
33654905-33655156,33655250-33655367,33655468-33655639,
33655729-33656270
Length = 737
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 178 GTIDSRWVGILQFGPGWGA 122
G + +RW G+ Q G GWG+
Sbjct: 160 GPVPARWKGVCQVGEGWGS 178
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 563 SLLVTMSSSLWRLPSDALPP*TVVPHPSRSTKIPWGITTP 444
SL T+SS+L R+PS +LPP ++ +P I P
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIP 433
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +3
Query: 360 LRQGCEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYF---C*SARMGN 494
L GC+ N C R +YP C P C NTPG F C +GN
Sbjct: 276 LLDGCQD--INECDESRFRYP--CSVPGTCVNTPGGFTCTCPDKTIGN 319
>01_06_0998 +
33685051-33685143,33685231-33685322,33685490-33685587,
33686671-33686826,33686927-33687546,33687888-33687958,
33688072-33688326,33688426-33688543,33688671-33688842,
33688928-33689469
Length = 738
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 178 GTIDSRWVGILQFGPGWG 125
G I SRW G+ Q G WG
Sbjct: 161 GPIPSRWKGVCQLGQAWG 178
>03_06_0136 +
31933843-31934715,31934906-31935021,31935233-31935408,
31935846-31936036,31936119-31936205,31936304-31936461,
31936555-31936765,31936856-31937005
Length = 653
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 645 PPSPDQTGAEFVISHDAIMILILVPAVFFV 556
PP P T A SH A+++L+ +VFF+
Sbjct: 3 PPFPTATAAASTTSHLALLLLLSSSSVFFL 32
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 530 RLPSDALPP*TVVPH-PSRSTKIPWGITTPCWIIAPCWIF 414
+LPS +LPP PH P ST + T+PC P F
Sbjct: 6 KLPSPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSCF 45
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +3
Query: 360 LRQGCEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYFC*SARMGNYRSRWQCI 518
++ GCE N C YP P C NT G F S GNY CI
Sbjct: 83 IKDGCED--INECLD-NVTYPC----PGICNNTMGSFTCSCHQGNYMENGTCI 128
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -3
Query: 624 GAEFVISHDAIMILILVPAVFFVGHN--EFELVEVAVRCTATLNGSSPSEQINKNTLGYY 451
G++F I H + + + ++ G E E+ EVA+R A L+ + PS ++ K +
Sbjct: 883 GSDFSI-HQLTSLKLFLVDIYCAGATAREVEVAEVAIRNHANLHPNHPSLEVRKFLKEHM 941
Query: 450 DTLLDN 433
T DN
Sbjct: 942 ATNEDN 947
>02_04_0240 -
21194597-21194743,21195579-21195680,21195797-21195875,
21195921-21196043,21196135-21196193,21196453-21196974,
21197434-21198177,21198426-21198506
Length = 618
Score = 27.5 bits (58), Expect = 9.7
Identities = 37/130 (28%), Positives = 53/130 (40%)
Frame = +2
Query: 122 STPAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALSLDLPVVVS 301
S P + K S+ S + SNS F + ++P S + ++ LHT +SL VS
Sbjct: 400 SLPRAAVNKGSHVSHVALSNSTTQKFVTSHPKHSVMPNSSQRASTLHTTQVSLKRSAGVS 459
Query: 302 QVKYLMFTLPLTIPNSLRRITTRM*ASYE*HMPSTSAQISSRVLLSNKVS*YPRVFLLIC 481
V P L +T TSA S+R S +S Y + +L
Sbjct: 460 SVN----NRPQNKRKQLSTPSTWDENKLNRGYARTSAPSSAR---SISLSCYSGLDVLSS 512
Query: 482 SDGELPFKVA 511
S G LP+K A
Sbjct: 513 SVGILPYKTA 522
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,858,957
Number of Sequences: 37544
Number of extensions: 458337
Number of successful extensions: 1151
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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