Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a21r
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    27   1.2  
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    25   3.5  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   4.7  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   8.1  

>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 141 PSGPILYPAGQLGGTTIILRRSTFDGGAV 227
           P  P  YP G LG T + L      GG +
Sbjct: 109 PENPPAYPKGVLGNTILPLHSPALSGGGI 137


>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 202 DQLLMVGQFDWRWLLH 249
           DQ+ +VGQ D R+LLH
Sbjct: 42  DQVYLVGQVDCRFLLH 57


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 259 TSAGEEATSNQTAPPSKV 206
           TS GE+++SN  A PSK+
Sbjct: 633 TSTGEQSSSNSRANPSKL 650


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 154 SYIQQGN*VAQRSYYVDQLLMVG 222
           SYIQ+G+  A ++Y +D+   VG
Sbjct: 420 SYIQEGDNTAMQTYAMDEYDQVG 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,858
Number of Sequences: 5004
Number of extensions: 22873
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)