Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a21r
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      24   0.78 
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   1.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.3  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              20   9.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   9.6  

>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 23.8 bits (49), Expect = 0.78
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
 Frame = -1

Query: 244 EATSNQTAP--PSKVDL----RNMIVVPPNCPAGYK 155
           EA SN   P      DL    R +I VPP CP G K
Sbjct: 31  EAVSNDMQPLEARSADLVPEPRYIIDVPPRCPPGSK 66


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = -1

Query: 244 EATSN--QTAPPSKVDL----RNMIVVPPNCPAGYK 155
           EA SN  Q+      DL    R +I VPP CP G K
Sbjct: 31  EAVSNDRQSLEARSADLVPEPRYIIDVPPRCPPGSK 66


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 126  TSRQTPSGPILYPAGQLGGTTIILRRSTFDGGA 224
            T +  PS P+LY       + ++  +S  +GGA
Sbjct: 1400 TVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGA 1432


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 126  TSRQTPSGPILYPAGQLGGTTIILRRSTFDGGA 224
            T +  PS P+LY       + ++  +S  +GGA
Sbjct: 1396 TVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGA 1428


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 186 LCHLIALLDIRW 151
           + HL  LLD++W
Sbjct: 283 ILHLFCLLDVQW 294


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 4/12 (33%), Positives = 9/12 (75%)
 Frame = -2

Query: 186 LCHLIALLDIRW 151
           +CH++ + D+ W
Sbjct: 292 ICHILCMSDLHW 303


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +2

Query: 218 WGSLIGGGFFTRASF 262
           WG  +  GF T  SF
Sbjct: 185 WGRFVPEGFLTSCSF 199


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 153 WDRTGSVARSSIKTYKI 103
           W +TG +  S + TY I
Sbjct: 76  WQQTGVMNGSELSTYNI 92


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 141 PSGPILYPAGQLGGTTIILRRSTFDG 218
           PS PI+Y + +L    +  + S  DG
Sbjct: 132 PSTPIVYASCKLQAAAVDHQGSVLDG 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,904
Number of Sequences: 438
Number of extensions: 1714
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)