Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a21f
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       29   1.9  
07_03_0525 - 19044978-19045508                                         27   7.5  
05_05_0016 - 21542300-21542886,21542956-21543286,21543310-215434...    27   7.5  
01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231...    27   7.5  
12_02_0653 + 21545862-21546584,21546661-21546696,21547182-215474...    27   10.0 
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808...    27   10.0 
04_01_0574 - 7450124-7450525,7450957-7451322                           27   10.0 

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 76   LKRTMADNENPCPXXXXXXXXXXXXXXTSAGEEATSNQTAPPSKVDLRNMIVVP--PNCP 249
            +KR +   + P P                A ++A +    PP +VD +   V+P  PN P
Sbjct: 830  IKRKLQQQKKPTPPPSSSQPAAPAATTKGAADDAPAPAQKPPEEVDSKRKRVMPRFPNLP 889

Query: 250  AGY 258
            A +
Sbjct: 890  AHF 892


>07_03_0525 - 19044978-19045508
          Length = 176

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 157 TSAGEEATSNQTAPPSKVDLRNMIVVPP 240
           T+A   A +   APPS+  +R  +V+PP
Sbjct: 42  TTADSTAAAAAAAPPSRERVRRRVVLPP 69


>05_05_0016 -
           21542300-21542886,21542956-21543286,21543310-21543419,
           21543526-21544069,21544190-21544345
          Length = 575

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 172 EATSNQTAPPSKVDLRNMIVVPPNCPAGYKMGP 270
           EATS  T PP +VDL  +I     CP    +GP
Sbjct: 220 EATS--TLPPFEVDLNTVIPADIVCPCQTYLGP 250


>01_06_0359 +
           28722524-28722613,28722794-28722863,28723062-28723159,
           28724029-28724167,28724243-28724370,28724500-28724592,
           28724707-28724757,28725405-28725470,28725568-28725633,
           28725900-28725977,28726248-28726427,28726502-28726577,
           28726660-28726823,28727569-28727931
          Length = 553

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 175 ATSNQTAPPSKVDLRNMIVVPPNCPAGYKMGPDG 276
           A SNQ APP  V + +M   P   P   +  P G
Sbjct: 476 AMSNQVAPPPSVQMASMTQQPQQMPMMMQPNPFG 509


>12_02_0653 +
           21545862-21546584,21546661-21546696,21547182-21547401,
           21547590-21548025,21548103-21548273,21548354-21548636,
           21548716-21548829,21549012-21549082,21549417-21549429
          Length = 688

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 199 PSKVDLRNMIVVPPNCPAGYKMG 267
           P K+DL   +V PP  PA + +G
Sbjct: 370 PKKLDLGKALVAPPKPPAEFTLG 392


>04_03_0227 +
           12979635-12980363,12980439-12980474,12980604-12980873,
           12980962-12981099,12981347-12981795,12981885-12982055,
           12982136-12982370
          Length = 675

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 199 PSKVDLRNMIVVPPNCPAGYKMG 267
           P K+DL    + PPN PA + +G
Sbjct: 443 PKKLDLGKAPIAPPNHPAEFTLG 465


>04_01_0574 - 7450124-7450525,7450957-7451322
          Length = 255

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 199 PSKVDLRNMIVVPPNCPAGYKMGPDGVCREVF 294
           PS++D R   V+  NC   Y  G + VC+ +F
Sbjct: 133 PSEIDERRRKVLCINCDETYSRGHNKVCKCLF 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,027,396
Number of Sequences: 37544
Number of extensions: 168905
Number of successful extensions: 338
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)