Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a21f
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-22|CAL36501.1|  147|Caenorhabditis elegans Hypothetical...    29   1.3  
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>AL132865-22|CAL36501.1|  147|Caenorhabditis elegans Hypothetical
           protein Y62E10A.11 protein.
          Length = 147

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 177 GFFTRASFLAFSNFVFTGNFSGARILVVGHC 85
           GFF      AF N  FT +  G R LV G C
Sbjct: 80  GFFGVKDMFAFENVGFTRSSEGKRYLVCGEC 110


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 419 HKKSERKLLHYNITIKDTLIILN*KRFIYAN 327
           + + E++ +H N+  KDT ++ + +RFI  N
Sbjct: 587 YSEHEKRCMHVNLQEKDTCVMQSCRRFIEIN 617


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,913,904
Number of Sequences: 27780
Number of extensions: 151159
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)