Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a21f
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      24   0.94 
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.7  

>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
 Frame = +1

Query: 172 EATSNQTAP--PSKVDL----RNMIVVPPNCPAGYK 261
           EA SN   P      DL    R +I VPP CP G K
Sbjct: 31  EAVSNDMQPLEARSADLVPEPRYIIDVPPRCPPGSK 66


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = +1

Query: 172 EATSN--QTAPPSKVDL----RNMIVVPPNCPAGYK 261
           EA SN  Q+      DL    R +I VPP CP G K
Sbjct: 31  EAVSNDRQSLEARSADLVPEPRYIIDVPPRCPPGSK 66


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 290  TSRQTPSGPILYPAGQLGGTTIILRRSTFDGGA 192
            T +  PS P+LY       + ++  +S  +GGA
Sbjct: 1400 TVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGA 1432


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 290  TSRQTPSGPILYPAGQLGGTTIILRRSTFDGGA 192
            T +  PS P+LY       + ++  +S  +GGA
Sbjct: 1396 TVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGA 1428


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 230 LCHLIALLDIRW 265
           + HL  LLD++W
Sbjct: 283 ILHLFCLLDVQW 294


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 4/12 (33%), Positives = 9/12 (75%)
 Frame = +2

Query: 230 LCHLIALLDIRW 265
           +CH++ + D+ W
Sbjct: 292 ICHILCMSDLHW 303


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 198 WGSLIGGGFFTRASF 154
           WG  +  GF T  SF
Sbjct: 185 WGRFVPEGFLTSCSF 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,962
Number of Sequences: 438
Number of extensions: 2091
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)