Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18a20r
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 31 0.17
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 29 0.51
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.2
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 28 1.6
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 28 1.6
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 2.1
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 27 3.6
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 3.6
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 4.7
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 8.3
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 8.3
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.3
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 8.3
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 8.3
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 587 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 691
I +MR ELG T RC D QA K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 29.5 bits (63), Expect = 0.51
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -1
Query: 210 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYAAEVSRVLEYVAQTRHQQITV 34
AITIGD + L + +++GP V +F + +P +LT ++ +S +++ Q Q +++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS--LSNYQQHLYQVLTQNVSL 235
Query: 33 NY 28
+
Sbjct: 236 RF 237
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 181 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPNSS 50
PP S+ S S +P + P +P L QP + V+ P S+
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -1
Query: 288 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 109
A E +A S L N+ + AAIT K + + F +E G V E+I
Sbjct: 74 AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130
Query: 108 LTDYAAE-VSRVLE 70
+ DY AE S++LE
Sbjct: 131 VGDYVAENKSKILE 144
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -3
Query: 190 QI*PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPNSSSTDYCKLPRT 20
QI PP+Q + S+Q PR++ S S RP+SSSTD P T
Sbjct: 372 QIKPPSQVFMSTGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPST 428
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +1
Query: 244 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 357
EG LSND L+ S + P D + ENAD+SFS D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 123 KIPVYLTDYAAEVSRVLEYVAQTRHQQITV 34
K+ +YLT+Y + +RV EY +T+ +T+
Sbjct: 261 KVILYLTNYMKDDNRVKEYFMKTQPPLVTL 290
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 111 YLTDYAAEVSRVLEYVAQTRHQQITVNYLEPI 16
YLT + +V++ L +AQ H+ + + LEP+
Sbjct: 366 YLTPHQRDVTQFLACLAQASHEFVPPDALEPL 397
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 217 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 336
+ DN ++ SGS + D + + G+E+ +D EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 123 KIPVYLTDYAAEVSRVLEYVAQTRHQQITVNYLE-PIPW 10
K+P + DY EV R+++ A + I + E IP+
Sbjct: 968 KVPTFYADYVNEVKRIIQRNANLEFEAIWKGHSENKIPY 1006
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 247 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 351
G GSG L ND L+ K S P +NA S G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 8.3
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +1
Query: 235 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 402
VV E D +LS LK ++G +AEN S T NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 535 ERISRSQQFTDFIEQV*DHDVKDA 606
E +SR QQF D + + ++KDA
Sbjct: 63 EEVSRRQQFVDKLRTILSTEIKDA 86
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 97 RSRGQPCSGVRRPNSSSTDY 38
R+RGQ SG +RP+SS + Y
Sbjct: 738 RARGQSVSGQQRPSSSMSLY 757
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,287
Number of Sequences: 5004
Number of extensions: 49571
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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