Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a19r
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    30   0.37 
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.5  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.9  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   7.9  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   7.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   7.9  

>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = -1

Query: 322 HPTALFKFLYHFISTRWCMTPLVASVPPLSVSTILTTPKRRLAICSSAQTVAAITTHSTG 143
           HP   F FL+ F+S  WCMT   A+      + I    +       +A  +A   T+  G
Sbjct: 257 HPIG-FSFLFGFLSVAWCMTDYDAT------AHIAEEIENAAVRAPNAIALALSITYVLG 309

Query: 142 WGGNLIASTSAIASAVPLLISEEL 71
           W  N++ + + + + +  LI+ EL
Sbjct: 310 WVFNIVLAFT-MGTDLDSLINSEL 332


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 606 GITHESSDHVSLRYLSIGRVNSYTGEEVSSYPTRPINARLE-YGIRW 743
           G++H +SD+ S  YL+  R +     ++  Y  + I   L+ Y + W
Sbjct: 115 GLSHSTSDYFSKEYLTAYRRSELLQNKLHEYQKKLITRVLDMYQLHW 161


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 423 WTGWISYHGLHWNIP 379
           W GW  Y  +HW  P
Sbjct: 434 WLGWTCYPSVHWAAP 448


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 596 CLRGHYPRIQRSCFFEILEYRQS 664
           CL G   R   SCF+E L+++QS
Sbjct: 203 CLAGSLYRSCVSCFYEYLKWKQS 225


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 123 AIRLPPHPVECVVIAATVCAELQIASL 203
           A RLPPH     V+AA V A + + +L
Sbjct: 325 ANRLPPHEEALEVLAAVVLAHINVFNL 351


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 309  SAVGCTMQENINKSVVLISKLCYAECSSVDHGMIS-SLSNSTTKILLEPVPVSSVERLPL 485
            S++        + S V  +    +  SSV    I+ SLS+S     +   P SSV  +  
Sbjct: 1041 SSIAVASVTGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGSPTSSVTAVSS 1100

Query: 486  RSSVNKVEASTLTGCIYKVSLSS 554
             SSV    +ST+       +LSS
Sbjct: 1101 TSSVEGTASSTIAAAASAATLSS 1123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,764,644
Number of Sequences: 5004
Number of extensions: 80012
Number of successful extensions: 237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)