Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a19f
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0168 - 5253588-5254688                                           30   1.6  
04_01_0250 + 3291368-3291454,3291621-3291938                           30   2.1  
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108...    30   2.1  
01_01_0529 + 3874865-3876285,3876352-3876367                           30   2.1  
10_06_0024 - 9733994-9734093,9734814-9734870,9734954-9735040,973...    29   4.9  
01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920           29   4.9  
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    28   8.5  
10_01_0216 - 2329413-2330419,2331382-2331537,2332363-2332897,233...    28   8.5  
07_01_0327 + 2289472-2289978,2290016-2290444,2290688-2290750,229...    28   8.5  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    28   8.5  

>09_02_0168 - 5253588-5254688
          Length = 366

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 496 RRACELPESTVTTQPIGCDEIIVLTADRPDSK 401
           R+A E+    VTT+ IG  E++   A+RP +K
Sbjct: 203 RKALEVATGEVTTEEIGSQEVVQEVAERPAAK 234


>04_01_0250 + 3291368-3291454,3291621-3291938
          Length = 134

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 209 DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTGQIRLNRGE 337
           DFR+  T R+N    + +P  +HRGN +       + R + GE
Sbjct: 22  DFRTDTTERINKFEEEEEPQTVHRGNVIEEQEQLNEQRRHGGE 64


>01_04_0136 +
           16506747-16506982,16507128-16507728,16510443-16510842,
           16513595-16513709,16513776-16514352
          Length = 642

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = -3

Query: 400 VRSNIGVTDRTAGSCASDKNLFPTIKTNLXXXXXXXXXXXSVDIYRLRLTKITVDSECAT 221
           ++  +   D T G CASD++   TI  N+            +    L       +  C  
Sbjct: 317 IKGKLNGADITQGECASDESHLSTIHANIEQIWVETTSDLHLSQVDLLAVPCDKEELCDN 376

Query: 220 ASEI-IPGLIGEH 185
           AS I +P L+ EH
Sbjct: 377 ASLISLPQLVNEH 389


>01_01_0529 + 3874865-3876285,3876352-3876367
          Length = 478

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 245 DLGQPQPV--YIHRGNYLSPTGNTGQIRLNRGEQVLIACTGSGR--TIRHPN 388
           D+  P  V   ++ GNY+ P   T  I+++  +++L+ CT   +  ++ H N
Sbjct: 392 DMENPYTVCFLLNEGNYIVPEATTWMIKVHMKKKILLGCTSYSKNGSLSHQN 443



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 362 SGRTIRHPNVASNLAVGTVSCQNNNLVTANWLR 460
           SGR    P + S +A+G +SC  ++ V A   R
Sbjct: 189 SGRDNPRPRIMSRVAMGVLSCSKDSFVVAEMER 221


>10_06_0024 -
           9733994-9734093,9734814-9734870,9734954-9735040,
           9736438-9736982,9737086-9737271
          Length = 324

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
 Frame = +3

Query: 306 IQVRFVLIVGNKF-LSLAQDPAVRSVTPMLLLTLLSGRSAVKTIISSQPIGCVVTVLSGN 482
           +Q+  V+ VG+   L LA      S+  +   +LLSG S+    +  Q  G         
Sbjct: 28  VQMVSVMFVGHLGELQLAGSSLAASLASVTGFSLLSGMSSALDTLCGQAYGA-------G 80

Query: 483 SHALLTLTMTLNKPTLDASIITLLFVWDSSSTMYFILYIGPALTATA 623
            H LL +        L A+ + +  VW S+  +  +    PA+ A A
Sbjct: 81  QHRLLGVYAQRAMLVLAAAAVPIALVWASAGEILLLFGQDPAIAAEA 127


>01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920
          Length = 274

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 113 VVLALVDPFEVWRAVPPPLQLMLREQASDAFLVYSA 6
           + L+ V P + WRA+P PLQ  LR      +L+Y A
Sbjct: 22  IFLSHVVPGDWWRALPHPLQSWLR-NGLGGYLIYFA 56


>11_06_0767 +
           27121761-27123335,27123701-27123910,27124843-27124911,
           27125387-27125656,27126027-27126377,27126480-27126757,
           27126887-27128330
          Length = 1398

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 272 IHRGNYLSPT---GNTGQIRLNRGEQVLIACTGSGRTI 376
           IH   +L+PT     T  + L   + V IA TGSG+T+
Sbjct: 619 IHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL 656


>10_01_0216 -
           2329413-2330419,2331382-2331537,2332363-2332897,
           2333026-2333514
          Length = 728

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 1   GSAEYTKNASDACSRSI-SCSGGGTALQTSNGSTRARTTG 117
           G    +++A DAC     SC GGG  L   +  TR +  G
Sbjct: 527 GGGSDSRSAPDACCNVAGSCVGGGVVLPQPSSKTRLKLHG 566


>07_01_0327 +
           2289472-2289978,2290016-2290444,2290688-2290750,
           2290845-2291126
          Length = 426

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 4   SAEYTKNASDACSRSISCSGGGTALQTS--NGSTRARTTG 117
           S  Y     DAC+ + + SGGG A++ S  +G TR    G
Sbjct: 206 SPAYDFRLRDACAATCAPSGGGAAVEASSVDGVTRITAVG 245


>06_01_1087 +
           8901950-8902102,8902960-8903996,8904438-8904586,
           8905437-8905690,8905785-8908799,8908889-8909001,
           8909975-8910164,8910399-8910512,8910591-8910698,
           8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 117 LLFLTKMSLKTTSMPISLFNNLKCSPIKPGMISEAVAHSESTVI 248
           LLF  +M    +S+PIS FN+++ S +    +S   AH E ++I
Sbjct: 465 LLFSDEMDAGNSSVPISQFNDMRNSEMFSSCLS--FAHFEQSMI 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,132,413
Number of Sequences: 37544
Number of extensions: 423907
Number of successful extensions: 1162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)