Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a19f
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75550-12|CAA99920.2|  356|Caenorhabditis elegans Hypothetical p...    28   5.8  
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z71185-4|CAA94909.2|  483|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z49207-4|CAA89073.1|  195|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z75550-12|CAA99920.2|  356|Caenorhabditis elegans Hypothetical
           protein T22C1.1 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +2

Query: 461 GNSAFGQLTCSSHAHHDAQQTNTRCFNNHFVIRVGFIVNNVFYPLYWSCFDRNRLEVLYV 640
           GNS FG+  C+ +   DA +     +N+++     F   +VFYP      +  + E+   
Sbjct: 106 GNSKFGEKKCALYEDKDA-KNEYNMYNHNY--NGKFCTCDVFYPDEDGGKELLQCEICED 162

Query: 641 WYHQ 652
           W+H+
Sbjct: 163 WFHE 166


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 254 QPQPVYIHRGNYLSPTGN 307
           QP+PV IH G Y  PT N
Sbjct: 296 QPKPVVIHTGRYSGPTYN 313


>Z71185-4|CAA94909.2|  483|Caenorhabditis elegans Hypothetical
           protein C35A5.7 protein.
          Length = 483

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/77 (22%), Positives = 30/77 (38%)
 Frame = +2

Query: 380 HPNVASNLAVGTVSCQNNNLVTANWLRGNSAFGQLTCSSHAHHDAQQTNTRCFNNHFVIR 559
           HP V+  L +   +     ++        SA   L C+         T+   F  HF++ 
Sbjct: 27  HPYVSVILCLAGTAMNIVTVIVLTRPSMRSAVNSLLCAIALCDILVMTSVLVFVTHFLLF 86

Query: 560 VGFIVNNVFYPLYWSCF 610
            G+  +   Y +YW+ F
Sbjct: 87  AGYRCDPTDYNIYWAYF 103


>Z49207-4|CAA89073.1|  195|Caenorhabditis elegans Hypothetical
           protein R07E3.7 protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 414 VPTARLEATLG*RIVRPDPVQAIRTCSPRLR 322
           +PT R E+T+G R   P+P+  I T SP  R
Sbjct: 39  LPT-RAESTIGIRPKIPNPIYTINTASPETR 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,902,579
Number of Sequences: 27780
Number of extensions: 365031
Number of successful extensions: 1058
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)