Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18a18r
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 31 0.16
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 1.9
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 27 2.6
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 2.6
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 27 3.4
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 26 4.5
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 4.5
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 7.9
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.9
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 558 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 662
I +MR ELG T RC D QA K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +2
Query: 215 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 328
EG LSND L+ S + P D + ENAD+SFS D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 113 RQQLPREDPC-LPDGLRSRGQAVFWSTSPNSSSTDY 9
R+ P+ P LP G+R + W TS SSS DY
Sbjct: 5 RKAAPQIAPTNLPTGVRLSSKDARWITSSGSSSFDY 40
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -1
Query: 181 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 65
AITIGD + L + +++GP V +F + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = -1
Query: 259 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 80
A E +A S L N+ + AAIT K + + F +E G V E+I
Sbjct: 74 AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130
Query: 79 LTDYAAEVK 53
+ DY AE K
Sbjct: 131 VGDYVAENK 139
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 100 LEKIPVYLTDYAAEVKP 50
L K PV++TDY ++KP
Sbjct: 331 LHKTPVFVTDYPQKIKP 347
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 188 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 307
+ DN ++ SGS + D + + G+E+ +D EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 218 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 322
G GSG L ND L+ K S P +NA S G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 7.9
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +2
Query: 206 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 373
VV E D +LS LK ++G +AEN S T NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 506 ERISRSQQFTDFIEQV*DHDVKDA 577
E +SR QQF D + + ++KDA
Sbjct: 63 EEVSRRQQFVDKLRTILSTEIKDA 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,475
Number of Sequences: 5004
Number of extensions: 46323
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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