Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a16f
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.70 
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    27   2.1  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   5.0  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   5.0  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    26   6.6  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   8.7  

>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 146 SNPEFFPCNTC---TRLNSFRMIITLDSFRFNSNKYSSTSQMFR 24
           S+  FF CN C    +L S R++I +  F F  + +S+T ++ R
Sbjct: 25  SSSVFFECNPCYSIEKLKSNRILIAVRLFSFAFSSFSTTLRILR 68


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/68 (22%), Positives = 28/68 (41%)
 Frame = +1

Query: 73  ESRVIIIRNEFNRVQVLHGKNSGLDVEQQNDSVSFITVILFVCFDVSVGRAEESAHGRGG 252
           E R  +I +    ++ LH   +G  +E +       T + F+CF     + +   +   G
Sbjct: 120 EERAKLIEDS-KELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYELDG 178

Query: 253 RSQAPFDH 276
           R + P  H
Sbjct: 179 RQEGPVQH 186


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 461 VEENKENGVGKDDENLFPLVVKDKSL 538
           VEEN  N + +   N+FP++ KD  L
Sbjct: 416 VEENNPNNIPEGILNVFPILSKDSHL 441


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 140 PEFFP-CNT-CTRLNSFRMIITLDS 72
           P  FP CN+ CT  N+FR+++  DS
Sbjct: 826 PSLFPGCNSKCTSSNAFRILVENDS 850


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 70  KESRVIIIRNEFNRVQVLHGKNSGLDVEQQNDSVSFIT 183
           + ++VI +R E+   ++LH   + LDV    DSV  ++
Sbjct: 37  QRAKVIPLRLEYEERKLLHLLTAALDVSDYTDSVDTLS 74


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 197 TNRMTVMKETLSFCCSTSNPEFFPCNTCTRLNSFRMIITLDSF 69
           TNR  ++KET S+  S  +   F  N+    N+  ++  LD +
Sbjct: 191 TNRSRIIKETSSYLLSQEDQLSFSVNSNGFTNACSVLYMLDKY 233


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 449 GNNPVEENKENGVGKDDENLFPLVVKDKSL 538
           G  P  E  E G GK+ ++LFP+    + L
Sbjct: 17  GERPTNEVYEYGKGKNVQHLFPITPMQRPL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,353
Number of Sequences: 5004
Number of extensions: 46307
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)