Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a16f
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0629 + 5464282-5464304,5464367-5465528                           33   0.32 
09_04_0528 - 18348071-18348136,18348477-18351209                       30   2.2  
06_03_0805 + 24775346-24775543,24775643-24775858,24775930-247759...    28   9.1  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    28   9.1  

>08_01_0629 + 5464282-5464304,5464367-5465528
          Length = 394

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = +1

Query: 31  IWDVLEYLLELNRKESRVIIIRNEFNRVQVLHGKNSGLDVEQQNDSVSFITVIL 192
           ++D LE L +  R    +++ RN F+R +++HGK +      +N  +S++  +L
Sbjct: 142 LFDCLENLADSGRSLLLMVLWRNWFSRNEIMHGKPAPTIEASKNFLLSYVNTLL 195


>09_04_0528 - 18348071-18348136,18348477-18351209
          Length = 932

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 37  DVLE-YLLELNRKESRVIIIRNEFNRVQVL 123
           DV E YL EL R+    ++ RN FNR+Q L
Sbjct: 481 DVAEGYLTELVRRSMIQVVARNSFNRIQCL 510


>06_03_0805 +
           24775346-24775543,24775643-24775858,24775930-24775970,
           24776510-24776551,24777019-24777055,24779796-24780092
          Length = 276

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 640 YCSTGCYLFCIHLDVC 593
           +CS GC L  +HLD+C
Sbjct: 132 FCSLGCKLATLHLDLC 147


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 225 CPANANVETNKQNDSNERNTIVLLFNIQ 142
           CP    V+  K++ SNER+++VL    Q
Sbjct: 592 CPGKGRVQDKKKSVSNERSSVVLSVEAQ 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,557,822
Number of Sequences: 37544
Number of extensions: 262540
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)