Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a14r
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.1  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    26   8.1  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   8.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   8.1  

>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = -2

Query: 548 IHFSFQGTCYIIFYISLDENLSFFNYYYY---CVFNHFF 441
           I F +   CY    I L   L    YYYY   C+  HFF
Sbjct: 44  IPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPHFF 82


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +1

Query: 619 ISTYKSASLSLTKKSDVYIGITHTKYHNVISIFLKRKAFYYVSEAHIKIYYCNTDKTLTE 798
           +S  K  SL   +K     GI+       ++++      YY  E  IK  YC   ++LTE
Sbjct: 424 LSITKIKSLFYERKEYTAKGISQPWTQLWVTLWFLSSLQYYAYECVIKPSYCKLRESLTE 483


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 610 LNPISTYKSASLSLTKKSDV 669
           L+P+ST+ ++S+SL   SDV
Sbjct: 168 LSPVSTFPASSISLDASSDV 187


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 329  GLKKEFFCEYFSA*VVSFFNVAKYSFRNS 243
            GL+   F E F     +FF +  Y+F NS
Sbjct: 1526 GLRNVIFTEVFLPACFAFFTICAYTFMNS 1554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,284
Number of Sequences: 5004
Number of extensions: 68258
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)