Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a14r
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical ...    32   0.47 
U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr...    29   5.8  
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co...    29   5.8  
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha...    29   5.8  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome as...    28   7.7  
AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog...    28   7.7  
AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.       28   7.7  

>AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical
           protein F58H7.1 protein.
          Length = 607

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +1

Query: 583 LDYFHGSFYLNPISTYKSASLSLTKKSDVYIGITHTKYHNVISIFLKRKAFYYVSEAHIK 762
           ++  H   ++ P+  +K    + T      + +     + VI  +LK+K F+Y S+AH  
Sbjct: 377 MEKHHIKAHITPLKCHKKTFDTATSNGRFVVPVEDDAIYAVIYEYLKKKPFHYTSKAHFL 436

Query: 763 I 765
           +
Sbjct: 437 V 437


>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 554 TLIHFSFQGTCYIIFYISLDENLSFFNYYYYCVFNHF 444
           +L+ F  +   YI FY    ++L   N YY C+FN F
Sbjct: 128 SLLVFWIEEVAYIYFYDIFQDSL-LRNSYYSCIFNTF 163


>U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical
           protein K09E2.2 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 519 VTCTLKAKMNQSSLFKNNHLFFGLFSWELLFESN 620
           +  T  +KM   SLF++N   +   SW++LFE +
Sbjct: 400 IVTTRLSKMGYVSLFQHNDFHYPYKSWKILFEQD 433


>AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical
           protein Y32B12B.7 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 521 YIIFYISLDENLSFFNYYYYC 459
           YI+ YISLD       +Y+YC
Sbjct: 282 YIVHYISLDAQAHVITWYFYC 302


>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical
           protein T25G3.2 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -2

Query: 140 LSFNISKKCSY-KCIYLNAAFPLRNVLQKAKLSLYSA 33
           LSF++  +    +C+ L+A FPL  VLQ++ +++ SA
Sbjct: 143 LSFHVFPQLDLARCLVLSACFPLVAVLQRSLVAMVSA 179


>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
           complex protein protein15 protein.
          Length = 1127

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +2

Query: 152 MTTELFGKIKIILRFIASFYKDDFQFYNCRYCF*NYI*QH*KN*LLMRR 298
           +TT++  + K   R+   F KDDF+ Y C     +Y+ +H +N +L+++
Sbjct: 787 LTTDVGTRQKTFERYKKMFEKDDFEMYLC-----DYLKEHGRNDVLLQQ 830


>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase
           1 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -2

Query: 140 LSFNISKKCSY-KCIYLNAAFPLRNVLQKAKLSLYSA 33
           LSF++  +    +C+ L+A FPL  VLQ++ +++ SA
Sbjct: 143 LSFHVFPQLDLARCLVLSACFPLVAVLQRSLVAMVSA 179


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 589  YFHGSFYLNPISTYKSASLSLTKKSDVYIGITHTKYHNVISIFL 720
            +FH     N   TY   SL +  +  +Y+ I +      +S+F+
Sbjct: 1450 FFHSILRDNKCDTYIDESLDMPSQCQIYLKIEYNSVKETLSVFI 1493


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 589  YFHGSFYLNPISTYKSASLSLTKKSDVYIGITHTKYHNVISIFL 720
            +FH     N   TY   SL +  +  +Y+ I +      +S+F+
Sbjct: 1450 FFHSILRDNKCDTYIDESLDMPSQCQIYLKIEYNSVKETLSVFI 1493


>AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome
           assembly factor protein6 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = +1

Query: 604 FYLNPISTYKSASLSLTKKSDVYIGITHTKYHNVISIFLKRKAFYYVSEAHIKIYYCNTD 783
           F+  PI   + A LSL ++  V   I   K+H +  I      FY      I  Y   TD
Sbjct: 130 FHETPIPISEDAKLSLMRQPSVAKNIRLEKHH-LKQILKSANVFYKNDVIRITNYNAYTD 188

Query: 784 KT 789
           KT
Sbjct: 189 KT 190


>AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog
           protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = +1

Query: 604 FYLNPISTYKSASLSLTKKSDVYIGITHTKYHNVISIFLKRKAFYYVSEAHIKIYYCNTD 783
           F+  PI   + A LSL ++  V   I   K+H +  I      FY      I  Y   TD
Sbjct: 130 FHETPIPISEDAKLSLMRQPSVAKNIRLEKHH-LKQILKSANVFYKNDVIRITNYNAYTD 188

Query: 784 KT 789
           KT
Sbjct: 189 KT 190


>AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = +1

Query: 604 FYLNPISTYKSASLSLTKKSDVYIGITHTKYHNVISIFLKRKAFYYVSEAHIKIYYCNTD 783
           F+  PI   + A LSL ++  V   I   K+H +  I      FY      I  Y   TD
Sbjct: 130 FHETPIPISEDAKLSLMRQPSVAKNIRLEKHH-LKQILKSANVFYKNDVIRITNYNAYTD 188

Query: 784 KT 789
           KT
Sbjct: 189 KT 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,417,497
Number of Sequences: 27780
Number of extensions: 369188
Number of successful extensions: 989
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)