Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18a14f
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 102 5e-23
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 33 0.045
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.24
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 29 0.74
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 27 2.2
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.0
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.2
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 5.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.2
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.1
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 9.1
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 25 9.1
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 9.1
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 25 9.1
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 102 bits (245), Expect = 5e-23
Identities = 70/208 (33%), Positives = 104/208 (50%), Gaps = 28/208 (13%)
Frame = +3
Query: 198 VSELGELGLVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGI--PMLEIP 371
+S LGEL + F+DLNPDV AFQR FV E+RR + ER LRYL EI +GI P +P
Sbjct: 1 MSALGELSTIHFKDLNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLP 60
Query: 372 GECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDE- 548
+ + D+ +LE +R++ ++++ L+ YL+ E ++L K FF +
Sbjct: 61 PSYESVLESSTIEDIIERITRLEARVRQLVESSQLLEARYLQQLEFANVLTKADAFFSKS 120
Query: 549 --MADPSREEEQVTLL--GEEGLMAG--GQALKLG-------------------FVAGVI 653
DP R + + + GE+ A AL+LG FV+G+I
Sbjct: 121 GNTVDPLRNNYETSSIFSGEDDTTAPLIENALELGTTGTFDSEETSPQMNTTLDFVSGII 180
Query: 654 LRERIPAFERMLWRACRGNVFLRQAEID 737
+ ER+LWR RGN+F+ Q D
Sbjct: 181 PTVKFQFLERILWRTLRGNLFIHQVRAD 208
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 33.1 bits (72), Expect = 0.045
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Frame = +3
Query: 264 QRKFVNE-VRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDL-EATFEKL 437
+RK VN+ V+ E+ R L+ KE+ + I M EIP + Q ++ D+ A +L
Sbjct: 142 KRKLVNDAVKHFIELNR-LKTYRKELYDEVISMNEIPSQASTTHQKLQVCDICSAYLSRL 200
Query: 438 ENELREVNQNAEALKRNYLELTELKHILRKTQVFFDEMADPSREEEQ 578
+N+ R + + + Y L + LR ++ D E+Q
Sbjct: 201 DNDRRLADHFSGKMHLGYAMLRNIARDLRAQLEDREKSRDKKDGEKQ 247
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.7 bits (66), Expect = 0.24
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +3
Query: 285 VRRCDEMERKLRYLE--KEIRRDGIPML------EIPGECPEAPQP-REMIDLEATFEKL 437
++RC E+E K+ LE + I ++ I L E + PE +P + I + + K
Sbjct: 157 IQRCSELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKK 216
Query: 438 ENELREVNQNAEALKRNYLELTE 506
+ + NQ ++ K+N TE
Sbjct: 217 KKKRNRKNQKKKSTKQNIEATTE 239
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 29.1 bits (62), Expect = 0.74
Identities = 18/104 (17%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Frame = +3
Query: 255 NAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEK 434
+A K + +R+C++ R ++E+ R + + E + + EM+ L + +
Sbjct: 8 DAVYNKVADILRQCEDFHRLSTHIERFEREQASLNMHVKTELEKHVEAVEMLTLCESARE 67
Query: 435 LENELREVNQNAEALKRNYLE---LTELKHILRKTQVFFDEMAD 557
+ +E +++ + K Y +++L +++++T V D + +
Sbjct: 68 MVDEFPLISRMSRIYKNCYATKQMISQLNNLVKETDVIEDMLRE 111
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 390 PQPREMIDLEATFEKLENELREVNQNAEALKRN-YLELTELKHILRKTQV-FFDEMADPS 563
P PR +LEATFE N + +V + R+ ++E+T L T++ E AD
Sbjct: 469 PMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENADKF 528
Query: 564 REEEQ 578
+++++
Sbjct: 529 KQQDK 533
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 3.0
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Frame = +3
Query: 186 AYACVSELGELGLVQFRDLNPDVNAFQRK-------FVNEVRRCDEM----ERKLRYLEK 332
A +S + + + FR+L+ + F+RK F E+R+ D + ++L LE+
Sbjct: 934 ALTTISSMNQAVNMNFRELDKSIQEFKRKCQSMEREFKTELRKLDGVLEARSKRLSQLEE 993
Query: 333 EIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKL---ENELREVNQNAEALKRN 488
++ G P +P+ + + L++ +KL + V + ALKR+
Sbjct: 994 RVKLLGAGS---TSSIPNSPRASKRVSLDSEDKKLVPASPDKSAVQRGITALKRD 1045
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 5.2
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +3
Query: 276 VNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMID-LEATFEKLENELR 452
VN +R + E+K+ ++E R +LE E Q + I+ LEA E+ +E
Sbjct: 127 VNRKQRAAKEEQKI---QEEFERQITDLLE------EQQQLKLEIERLEAETERANSETE 177
Query: 453 EVNQNAEALKRNYLELTE--LKH 515
+ + EAL+ Y EL LKH
Sbjct: 178 QYEKQKEALEEEYEELRNECLKH 200
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 5.2
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = +3
Query: 297 DEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEA 476
D +ERKLR L EIR + E EA + R + E++E E R + + E
Sbjct: 417 DNLERKLRQLRVEIR-------ALEREKDEASKER-LKAARKEAEQVEEETRPIREKYEL 468
Query: 477 LKRNYLELTELKHIL 521
K EL + K L
Sbjct: 469 EKSRGSELQDAKRRL 483
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 5.2
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Frame = +3
Query: 225 VQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRR--DGIPML-EIPGECPEAPQ 395
V +LN ++ ++ K ++ +E+ +Y + ++RR + I L + E +
Sbjct: 559 VNVSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDNDLRRFHESINKLQDREKELTSNLE 618
Query: 396 PREMI--DLEATFEKLENELREVNQNAEALKRNYLELTELKHILR-KTQVFFDEMADPSR 566
+ ++ L T LE E + + ++ L+ T L IL K V ++ D +
Sbjct: 619 KKNLVISSLRETVAMLEKERESIKKYLSGNAKD-LDNTNLMEILNDKISVLQRQLTD-VK 676
Query: 567 EEEQVTLLGEEGLMAGGQALKLGF 638
+E V+ E + GQ L F
Sbjct: 677 DELDVSEEEREEAIVAGQKLSASF 700
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 393 QPREMIDLEATFEKLENELREVNQNAEALKRN 488
Q RE+I+ E KLE+E + N E LK++
Sbjct: 740 QERELIESEKHRMKLESENLHLQANIELLKKD 771
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNA 470
R + +R ++ + +E D +LE+P PE +++ E ++EN R NQ+
Sbjct: 161 RMTKRQRAIQGILEEGEED--ELLELP---PETSGRKKLTPEEMALRRIENARRRKNQSE 215
Query: 471 EALKRNYLE 497
L+ +E
Sbjct: 216 RRLEEEKME 224
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 189 YACVSELGELGLVQFRDLN 245
YACV+ + LG++ FRD N
Sbjct: 171 YACVAMIAGLGVLGFRDPN 189
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 9.1
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
Frame = +3
Query: 324 LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELT 503
+EKE + GI ML+ E PE+ + A K + E + N N R+Y+
Sbjct: 1 MEKEDKSFGIGMLDYNRENPESSGHSRV----AVIRKQKTE--QENNNLSWEDRHYIPDL 54
Query: 504 ELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQAL---KLGFVAGVILRERIPA 674
+ ++ DE + + + + +GG + KL + + P
Sbjct: 55 HKSNKIKTPTSLADEKKSHNELDPKAQIKKLMETRSGGTYIPPAKLKALQAQLTDVNTPE 114
Query: 675 FERMLWRACRGNV 713
++RM W A + ++
Sbjct: 115 YQRMQWEALKKSI 127
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 9.1
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 375 ECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDEMA 554
+C A + LEA L+ + EV N + ++ Y+ + K+ILRK FD
Sbjct: 392 DCLRANKSTMAWGLEARVPFLDKDFLEVALNIDPEEKMYINGRKEKYILRKA---FDTTH 448
Query: 555 DPS 563
D S
Sbjct: 449 DSS 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,434
Number of Sequences: 5004
Number of extensions: 52676
Number of successful extensions: 174
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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