Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a12r
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    31   0.18 
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    28   1.7  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   2.3  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    27   3.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   4.0  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   4.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.9  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   9.2  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
            homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = -2

Query: 713  EKIEAVPVTIPALDLTAMTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVAT 534
            E   A   T    ++T++ +P +   L +   + ++ P+    L +  ++ L  Q+ V +
Sbjct: 857  ETSSAFAKTYAEKEVTSINLPSVRKPLDESYYDHSISPF--DPLCQ--SSFLAPQTPVKS 912

Query: 533  PVIIPAMEVSL--WTLTEISAALESPVTNPV 447
               +P +E +   W   + S+ LESPV NPV
Sbjct: 913  KHALPLVEANAPPWEPIDFSSLLESPVPNPV 943


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 468 LKSSRDLGQGPEGDFHSRDNHWSGNLALSSQDGG 569
           L S++   Q P GD++S D   S     SSQ  G
Sbjct: 217 LNSNKKQSQSPNGDYNSSDESCSNKTVASSQRRG 250


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 408 HDHVEGILQVRNQNRVSYRALKSSRDLGQGPEGDFHSRDNHWSGNLALSSQDG 566
           H+  +  L+ RN   +S     SS  L         S   H SGNLAL S  G
Sbjct: 203 HEMAQESLETRNPGNIS----SSSAPLASDQSPTVSSNHIHASGNLALGSNSG 251


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 87  DHRSHRGWAFNNNDRFGSD 143
           +H+ H GW F NN+ F  +
Sbjct: 98  NHKYHYGWVFLNNEEFSDE 116


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
 Frame = -2

Query: 704 EAVPVTIPALDLTAMTIP-DLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPV 528
           E   +TIP  ++T MTIP +    +  P  E   I  +   + E +T + T   +  T  
Sbjct: 22  EITTMTIPMEEITTMTIPMEEITTMTIPMEE---ITTMTTPMEE-ITTITTPMEETTT-- 75

Query: 527 IIPAMEVSLWTLTEISAALESPVTNPVLVPYLENALNVIMD 405
           I P +E +  T+  + AA+ +P+     +P +E     +++
Sbjct: 76  ITPMVETT--TILPM-AAMTTPMVETTTIPTVETTTTPMVE 113


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 455 NPVLVPYLENALNVIMDAMFA 393
           N  ++PYL+N L VI D + A
Sbjct: 326 NEAMIPYLQNILKVIRDTLTA 346


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 2/113 (1%)
 Frame = -2

Query: 689 TIPALDLTAMTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPV--IIPA 516
           T+P    ++ +IP    +     T  + +P    +     +    G S ++TP+   +P 
Sbjct: 194 TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPP 253

Query: 515 MEVSLWTLTEISAALESPVTNPVLVPYLENALNVIMDAMFAGHEVTSICVSIP 357
              S  ++     +  S  TN   +P    +          G+  T +  ++P
Sbjct: 254 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/62 (20%), Positives = 30/62 (48%)
 Frame = -2

Query: 584 LNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISAALESPVTNPVLVPYLENALNVIMD 405
           LNE ++      S+    +  P+M  +++   E    + +P+  P+L+P L + +  + D
Sbjct: 478 LNEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPILIPLLISFIKEVKD 537

Query: 404 AM 399
            +
Sbjct: 538 ML 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,777
Number of Sequences: 5004
Number of extensions: 48152
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)