Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18a10r
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81049-1|CAB61001.2| 503|Caenorhabditis elegans Hypothetical pr... 73 4e-13
L29052-1|AAA27982.2| 503|Caenorhabditis elegans cell death prot... 73 4e-13
AF210702-1|AAG42045.1| 503|Caenorhabditis elegans caspase CED-3... 73 4e-13
Z93393-12|CAD18879.1| 268|Caenorhabditis elegans Hypothetical p... 59 5e-09
Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical p... 59 5e-09
AF088286-1|AAC98293.1| 268|Caenorhabditis elegans caspase-relat... 59 5e-09
AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-relat... 59 5e-09
AF088289-1|AAC98296.1| 263|Caenorhabditis elegans caspase-relat... 38 0.007
AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-relat... 38 0.007
AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase prote... 38 0.007
AL032657-6|CAA21735.3| 139|Caenorhabditis elegans Hypothetical ... 37 0.022
AF088290-1|AAC98297.1| 139|Caenorhabditis elegans caspase-relat... 37 0.022
AC006713-1|AAK68407.2| 310|Caenorhabditis elegans Hypothetical ... 33 0.20
Z93393-13|CAD18880.1| 149|Caenorhabditis elegans Hypothetical p... 31 1.1
AF088287-1|AAC98294.1| 149|Caenorhabditis elegans caspase-relat... 31 1.1
L23651-8|AAK84495.1| 500|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF023454-1|AAB82794.1| 707|Caenorhabditis elegans protein phosp... 29 3.3
AF003389-12|AAM22065.1| 572|Caenorhabditis elegans Phosphatase ... 29 3.3
AF003389-11|AAC71139.2| 707|Caenorhabditis elegans Phosphatase ... 29 3.3
AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical ... 29 4.4
AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical ... 29 4.4
U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin fam... 28 7.7
U40934-1|AAA81679.1| 511|Caenorhabditis elegans Hypothetical pr... 28 7.7
>Z81049-1|CAB61001.2| 503|Caenorhabditis elegans Hypothetical
protein C48D1.2 protein.
Length = 503
Score = 72.5 bits (170), Expect = 4e-13
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
Frame = -2
Query: 853 IAVLTHGSSDGMLRAKDMQYSEKEILRHFKVHDKPFLVTKPKFLIIQACRGKEEMQGAAV 674
+ +L+HG + ++ D+ S EI + P L KPK + +QACRG+ G V
Sbjct: 310 LVILSHGEENVIIGVDDIPISTHEIYDLLNAANAPRLANKPKIVFVQACRGERRDNGFPV 369
Query: 673 FRS-----GKLRKDLDED----------LEPYVL------PIEADMLILHSSYSGKPSHR 557
S LR+ D + P V P +AD+LI +++ + S R
Sbjct: 370 LDSVDGVPAFLRRGWDNRDGPLFNFLGCVRPQVQQVWRKKPSQADILIAYATTAQYVSWR 429
Query: 556 HEVDGSWFIQSLCSKINELSETHDLESIITEVKREVAIDRYHKEFNRRTSE-YDINKQMP 380
+ GSWFIQ++C + ++ D+ ++TEV ++VA +TS+ +I KQMP
Sbjct: 430 NSARGSWFIQAVCEVFSTHAKDMDVVELLTEVNKKVAC-------GFQTSQGSNILKQMP 482
Query: 379 VITSTLIRKLY 347
+TS L++K Y
Sbjct: 483 EMTSRLLKKFY 493
>L29052-1|AAA27982.2| 503|Caenorhabditis elegans cell death protein
protein.
Length = 503
Score = 72.5 bits (170), Expect = 4e-13
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
Frame = -2
Query: 853 IAVLTHGSSDGMLRAKDMQYSEKEILRHFKVHDKPFLVTKPKFLIIQACRGKEEMQGAAV 674
+ +L+HG + ++ D+ S EI + P L KPK + +QACRG+ G V
Sbjct: 310 LVILSHGEENVIIGVDDIPISTHEIYDLLNAANAPRLANKPKIVFVQACRGERRDNGFPV 369
Query: 673 FRS-----GKLRKDLDED----------LEPYVL------PIEADMLILHSSYSGKPSHR 557
S LR+ D + P V P +AD+LI +++ + S R
Sbjct: 370 LDSVDGVPAFLRRGWDNRDGPLFNFLGCVRPQVQQVWRKKPSQADILIAYATTAQYVSWR 429
Query: 556 HEVDGSWFIQSLCSKINELSETHDLESIITEVKREVAIDRYHKEFNRRTSE-YDINKQMP 380
+ GSWFIQ++C + ++ D+ ++TEV ++VA +TS+ +I KQMP
Sbjct: 430 NSARGSWFIQAVCEVFSTHAKDMDVVELLTEVNKKVAC-------GFQTSQGSNILKQMP 482
Query: 379 VITSTLIRKLY 347
+TS L++K Y
Sbjct: 483 EMTSRLLKKFY 493
>AF210702-1|AAG42045.1| 503|Caenorhabditis elegans caspase CED-3
protein.
Length = 503
Score = 72.5 bits (170), Expect = 4e-13
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
Frame = -2
Query: 853 IAVLTHGSSDGMLRAKDMQYSEKEILRHFKVHDKPFLVTKPKFLIIQACRGKEEMQGAAV 674
+ +L+HG + ++ D+ S EI + P L KPK + +QACRG+ G V
Sbjct: 310 LVILSHGEENVIIGVDDIPISTHEIYDLLNAANAPRLANKPKIVFVQACRGERRDNGFPV 369
Query: 673 FRS-----GKLRKDLDED----------LEPYVL------PIEADMLILHSSYSGKPSHR 557
S LR+ D + P V P +AD+LI +++ + S R
Sbjct: 370 LDSVDGVPAFLRRGWDNRDGPLFNFLGCVRPQVQQVWRKKPSQADILIAYATTAQYVSWR 429
Query: 556 HEVDGSWFIQSLCSKINELSETHDLESIITEVKREVAIDRYHKEFNRRTSE-YDINKQMP 380
+ GSWFIQ++C + ++ D+ ++TEV ++VA +TS+ +I KQMP
Sbjct: 430 NSARGSWFIQAVCEVFSTHAKDMDVVELLTEVNKKVAC-------GFQTSQGSNILKQMP 482
Query: 379 VITSTLIRKLY 347
+TS L++K Y
Sbjct: 483 EMTSRLLKKFY 493
>Z93393-12|CAD18879.1| 268|Caenorhabditis elegans Hypothetical
protein Y48E1B.13b protein.
Length = 268
Score = 58.8 bits (136), Expect = 5e-09
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Frame = -2
Query: 847 VLTHGSSDG-MLRAKDMQYSEKEILRHFKVHDKPFLVTKPKFLIIQACRGKEEMQGAAVF 671
+L+HG G + DM + E+ + H L+ KPK++ + ACRG + G V
Sbjct: 93 LLSHGDGAGSVFGIDDMPVNVMEVSTYLAYHQN--LLLKPKWVAVSACRGGKLNMGVPVD 150
Query: 670 RSGKLRKDLDEDLEPY-------VLP-----IEADMLILHSSYSGKPSHRHEVDGSWFIQ 527
L +D + + ++P + AD++I S+ G S+R E G+W+I+
Sbjct: 151 GLPAL-EDKCAPISKFWNLMMSRIMPGTFTSLNADVIISFSTTDGFTSYRDEEAGTWYIK 209
Query: 526 SLCSKINELSETHDLESIITEVKREVAIDRYHKEFNRRTSEYDINKQMPVITSTLIRKLY 347
S+C N+ S+T L I+TE R V + +Y + KQ P I S L ++ +
Sbjct: 210 SMCKVFNKHSKTMHLLDILTETGRNV-VTKY-----ENVQGNVVLKQAPEILSRLTKQWH 263
Query: 346 LRKYM 332
+ M
Sbjct: 264 FSRSM 268
>Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical
protein Y48E1B.13a protein.
Length = 536
Score = 58.8 bits (136), Expect = 5e-09
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Frame = -2
Query: 847 VLTHGSSDG-MLRAKDMQYSEKEILRHFKVHDKPFLVTKPKFLIIQACRGKEEMQGAAVF 671
+L+HG G + DM + E+ + H L+ KPK++ + ACRG + G V
Sbjct: 361 LLSHGDGAGSVFGIDDMPVNVMEVSTYLAYHQN--LLLKPKWVAVSACRGGKLNMGVPVD 418
Query: 670 RSGKLRKDLDEDLEPY-------VLP-----IEADMLILHSSYSGKPSHRHEVDGSWFIQ 527
L +D + + ++P + AD++I S+ G S+R E G+W+I+
Sbjct: 419 GLPAL-EDKCAPISKFWNLMMSRIMPGTFTSLNADVIISFSTTDGFTSYRDEEAGTWYIK 477
Query: 526 SLCSKINELSETHDLESIITEVKREVAIDRYHKEFNRRTSEYDINKQMPVITSTLIRKLY 347
S+C N+ S+T L I+TE R V + +Y + KQ P I S L ++ +
Sbjct: 478 SMCKVFNKHSKTMHLLDILTETGRNV-VTKY-----ENVQGNVVLKQAPEILSRLTKQWH 531
Query: 346 LRKYM 332
+ M
Sbjct: 532 FSRSM 536
>AF088286-1|AAC98293.1| 268|Caenorhabditis elegans caspase-related
protein 1B protein.
Length = 268
Score = 58.8 bits (136), Expect = 5e-09
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Frame = -2
Query: 847 VLTHGSSDG-MLRAKDMQYSEKEILRHFKVHDKPFLVTKPKFLIIQACRGKEEMQGAAVF 671
+L+HG G + DM + E+ + H L+ KPK++ + ACRG + G V
Sbjct: 93 LLSHGDGAGSVFGIDDMPVNVMEVSTYLAYHQN--LLLKPKWVAVSACRGGKLNMGVPVD 150
Query: 670 RSGKLRKDLDEDLEPY-------VLP-----IEADMLILHSSYSGKPSHRHEVDGSWFIQ 527
L +D + + ++P + AD++I S+ G S+R E G+W+I+
Sbjct: 151 GLPAL-EDKCAPISKFWNLMMSRIMPGTFTSLNADVIISFSTTDGFTSYRDEEAGTWYIK 209
Query: 526 SLCSKINELSETHDLESIITEVKREVAIDRYHKEFNRRTSEYDINKQMPVITSTLIRKLY 347
S+C N+ S+T L I+TE R V + +Y + KQ P I S L ++ +
Sbjct: 210 SMCKVFNKHSKTMHLLDILTETGRNV-VTKY-----ENVQGNVVLKQAPEILSRLTKQWH 263
Query: 346 LRKYM 332
+ M
Sbjct: 264 FSRSM 268
>AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-related
protein 1A protein.
Length = 536
Score = 58.8 bits (136), Expect = 5e-09
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Frame = -2
Query: 847 VLTHGSSDG-MLRAKDMQYSEKEILRHFKVHDKPFLVTKPKFLIIQACRGKEEMQGAAVF 671
+L+HG G + DM + E+ + H L+ KPK++ + ACRG + G V
Sbjct: 361 LLSHGDGAGSVFGIDDMPVNVMEVSTYLAYHQN--LLLKPKWVAVSACRGGKLNMGVPVD 418
Query: 670 RSGKLRKDLDEDLEPY-------VLP-----IEADMLILHSSYSGKPSHRHEVDGSWFIQ 527
L +D + + ++P + AD++I S+ G S+R E G+W+I+
Sbjct: 419 GLPAL-EDKCAPISKFWNLMMSRIMPGTFTSLNADVIISFSTTDGFTSYRDEEAGTWYIK 477
Query: 526 SLCSKINELSETHDLESIITEVKREVAIDRYHKEFNRRTSEYDINKQMPVITSTLIRKLY 347
S+C N+ S+T L I+TE R V + +Y + KQ P I S L ++ +
Sbjct: 478 SMCKVFNKHSKTMHLLDILTETGRNV-VTKY-----ENVQGNVVLKQAPEILSRLTKQWH 531
Query: 346 LRKYM 332
+ M
Sbjct: 532 FSRSM 536
>AF088289-1|AAC98296.1| 263|Caenorhabditis elegans caspase-related
protein 2B protein.
Length = 263
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = -2
Query: 610 EADMLILHSSYSGKPSHRHEVDGSWFIQSLCSKINELSETHDLESIITEVKREVAIDRYH 431
+AD+L+ S+ G S R E G+W+IQ L I E ++ L ++ E R V +++Y
Sbjct: 179 QADLLVSFSTSPGFLSFRDETKGTWYIQELYRVIIENAKDTHLADLLMETNRRV-VEKYE 237
Query: 430 KE 425
+
Sbjct: 238 AD 239
>AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-related
protein 2A protein.
Length = 826
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = -2
Query: 610 EADMLILHSSYSGKPSHRHEVDGSWFIQSLCSKINELSETHDLESIITEVKREVAIDRYH 431
+AD+L+ S+ G S R E G+W+IQ L I E ++ L ++ E R V +++Y
Sbjct: 742 QADLLVSFSTSPGFLSFRDETKGTWYIQELYRVIIENAKDTHLADLLMETNRRV-VEKYE 800
Query: 430 KE 425
+
Sbjct: 801 AD 802
>AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase protein
2 protein.
Length = 826
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = -2
Query: 610 EADMLILHSSYSGKPSHRHEVDGSWFIQSLCSKINELSETHDLESIITEVKREVAIDRYH 431
+AD+L+ S+ G S R E G+W+IQ L I E ++ L ++ E R V +++Y
Sbjct: 742 QADLLVSFSTSPGFLSFRDETKGTWYIQELYRVIIENAKDTHLADLLMETNRRV-VEKYE 800
Query: 430 KE 425
+
Sbjct: 801 AD 802
>AL032657-6|CAA21735.3| 139|Caenorhabditis elegans Hypothetical
protein Y47H9C.6 protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.022
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = -2
Query: 610 EADMLILHSSYSGKPSHRHEVDGSWFIQSLCSKINELSETHDLESIITEVKREVAIDRYH 431
+AD+L+ S+ G S + E +W+IQ L I E ++ L ++TE R V +++Y
Sbjct: 50 QADLLVSFSTSPGFLSFKDETKDTWYIQELYRVIIENAKDTHLADLLTETNRRV-VEKYE 108
Query: 430 KE 425
+
Sbjct: 109 AD 110
>AF088290-1|AAC98297.1| 139|Caenorhabditis elegans caspase-related
protein 3 protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.022
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = -2
Query: 610 EADMLILHSSYSGKPSHRHEVDGSWFIQSLCSKINELSETHDLESIITEVKREVAIDRYH 431
+AD+L+ S+ G S + E +W+IQ L I E ++ L ++TE R V +++Y
Sbjct: 50 QADLLVSFSTSPGFLSFKDETKDTWYIQELYRVIIENAKDTHLADLLTETNRRV-VEKYE 108
Query: 430 KE 425
+
Sbjct: 109 AD 110
>AC006713-1|AAK68407.2| 310|Caenorhabditis elegans Hypothetical
protein Y119D3A.4 protein.
Length = 310
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -2
Query: 523 LCSKINELSETHDLESIITEVKREVAIDRYHKEFNRRTSEYDINKQMPVITSTLIRKLYL 344
+ S +N+ H + S++ +K+EV I +R S DI +P+ S +RKL++
Sbjct: 117 IISYLNDQDREHAVNSLVDVLKKEVDIHMKTISLHRDLSIDDIVLILPLFNSQTLRKLWI 176
Query: 343 R 341
R
Sbjct: 177 R 177
>Z93393-13|CAD18880.1| 149|Caenorhabditis elegans Hypothetical
protein Y48E1B.13c protein.
Length = 149
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 847 VLTHGSSDG-MLRAKDMQYSEKEILRHFKVHDKPFLVTKPKFLIIQACRGKEEMQGAA 677
+L+HG G + DM + E+ + H L+ KPK++ + ACRG + G +
Sbjct: 93 LLSHGDGAGSVFGIDDMPVNVMEVSTYLAYHQN--LLLKPKWVAVSACRGGKIEHGCS 148
>AF088287-1|AAC98294.1| 149|Caenorhabditis elegans caspase-related
protein 1C protein.
Length = 149
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 847 VLTHGSSDG-MLRAKDMQYSEKEILRHFKVHDKPFLVTKPKFLIIQACRGKEEMQGAA 677
+L+HG G + DM + E+ + H L+ KPK++ + ACRG + G +
Sbjct: 93 LLSHGDGAGSVFGIDDMPVNVMEVSTYLAYHQN--LLLKPKWVAVSACRGGKIEHGCS 148
>L23651-8|AAK84495.1| 500|Caenorhabditis elegans Hypothetical
protein C29E4.10 protein.
Length = 500
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 27 AFFIRYLLMAVTICSFDELNSSKCWNVFATFKKFRAVSSSGRTSK 161
+ FI+ +L+ +I + K W TF F AVS G TSK
Sbjct: 3 SIFIKIILILPSIATKTNNIDIKSWRSAQTFDGFGAVSGGGATSK 47
>AF023454-1|AAB82794.1| 707|Caenorhabditis elegans protein
phosphatase with EF-hands protein.
Length = 707
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 206 LFRSFSLHEKLFRVLFRSTTGRRNRSEFLESCEYVPAFRR 87
L+R S E LFR + + +G+ + EF+++CE + + +
Sbjct: 627 LYRHKSTLETLFRFMDKDNSGQVSMKEFIDACEVLGKYTK 666
>AF003389-12|AAM22065.1| 572|Caenorhabditis elegans Phosphatase
with ef hands protein1, isoform b protein.
Length = 572
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 206 LFRSFSLHEKLFRVLFRSTTGRRNRSEFLESCEYVPAFRR 87
L+R S E LFR + + +G+ + EF+++CE + + +
Sbjct: 492 LYRHKSTLETLFRFMDKDNSGQVSMKEFIDACEVLGKYTK 531
>AF003389-11|AAC71139.2| 707|Caenorhabditis elegans Phosphatase
with ef hands protein1, isoform a protein.
Length = 707
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 206 LFRSFSLHEKLFRVLFRSTTGRRNRSEFLESCEYVPAFRR 87
L+R S E LFR + + +G+ + EF+++CE + + +
Sbjct: 627 LYRHKSTLETLFRFMDKDNSGQVSMKEFIDACEVLGKYTK 666
>AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6b protein.
Length = 343
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 559 RHEVDGSWFIQSLCSKINELSETHDL 482
RHE D +F CSK N + THD+
Sbjct: 3 RHETDCRYFANGYCSKGNTCTFTHDV 28
>AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6a protein.
Length = 413
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 559 RHEVDGSWFIQSLCSKINELSETHDL 482
RHE D +F CSK N + THD+
Sbjct: 3 RHETDCRYFANGYCSKGNTCTFTHDV 28
>U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin family
protein 18 protein.
Length = 473
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 276 DDSLIAGVGL-IKHWLTGGSMYFLRYNFLMSVEVITGICLLMSYSDV 413
+D LI + I WL +L NF++S V+ +CLL+ DV
Sbjct: 39 NDKLIEFYNIGIFQWLRDQDSVYLYSNFIVSFLVLCSVCLLIFVFDV 85
>U40934-1|AAA81679.1| 511|Caenorhabditis elegans Hypothetical
protein F35H10.7 protein.
Length = 511
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 559 CVMVSRSKNCAISAYPLQLATRKAPSLRPSPSLAFP 666
C + +S +S YP + KAPS P PS + P
Sbjct: 19 CFLTGQSGEKIVSIYPHRKPATKAPSKDPQPSSSNP 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,422,831
Number of Sequences: 27780
Number of extensions: 454055
Number of successful extensions: 1443
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -