Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a10f
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    27   3.9  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   3.9  
SPAC27D7.05c |apc14|omt1|anaphase-promoting complex subunit Apc1...    26   6.9  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    26   6.9  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   6.9  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   6.9  

>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 165 EVEYDLKDAVEAFDEALELTENEQDNVTSDEAVESVFVDA 284
           EVE  L+   +  DE ++ T+N   N+ S E + ++ +DA
Sbjct: 287 EVELLLETYCKQVDEIVQQTDNLVGNIRSTEEICNIMLDA 326


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 27/106 (25%), Positives = 52/106 (49%)
 Frame = +3

Query: 366 KNIEEKRVSDSKITDQVEEIESESKFYNNRALTKYATTYELEKFEKNALLIFNQENIYGY 545
           K IE++R+    ++     ++S+ +  N   +T+ +T+ EL    KN  L   +E     
Sbjct: 282 KKIEDERMRQMSVSSD-RTLDSQLQTVNEN-ITRISTSIEL----KNTAL---EEEHGDL 332

Query: 546 SPRKGTEKDVESLTVTFQKFGFEVVEHKDLTKDEVLNEIKEFSSRD 683
              +G  K++E+L    +K   EV+   +  KDE  +  K+F S++
Sbjct: 333 QQIRGKAKELETLLRGKRKRLDEVLSVYEKRKDEHQSISKDFKSQE 378


>SPAC27D7.05c |apc14|omt1|anaphase-promoting complex subunit
           Apc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 222 SIPTLHRMLLQHLSSHIQPL 163
           SIP   + ++QHL+ H+Q L
Sbjct: 82  SIPEYRQAIMQHLTKHVQQL 101


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 609 FEVVEHKDLTKDEVLNEIKEFSSR-DLRDY 695
           +E++   D +KD  +N + EFS++ DLRD+
Sbjct: 103 WEILIVDDESKDTTVNAVLEFSNKLDLRDH 132


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 260 SFIGCYIVLFV-FSQFQRFIECFYSIFQVIFNLFAAFQIFLTLVLCFRI 117
           SF  CY  +F+ F       EC+YS+     + FA   +  T+ +   I
Sbjct: 92  SFYICYFSIFLLFFAISFQAECYYSLTAYATSAFAGHSLLSTIAVANNI 140


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 383 FLFDVFCLYRWYFDRFW 333
           F+F +FC   W  D +W
Sbjct: 202 FVFQIFCCVLWCLDDYW 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,675
Number of Sequences: 5004
Number of extensions: 50711
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)