Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a10f
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    31   0.77 
10_08_0288 + 16527666-16527837,16527915-16528132,16528491-165285...    31   1.0  
02_05_0362 + 28291891-28292263,28292432-28292616                       29   4.1  
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990...    28   7.2  
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159...    28   7.2  

>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 311 SPTKSYLSRTCRNTTCRDKKHRREKGIRFKNHRSSRGDRK*K 436
           S ++SY S +   ++  D +H+R K  +   HRS++G  K K
Sbjct: 198 SESESYSSSSLDTSSSSDHRHKRRKSSKKDKHRSAKGKSKHK 239


>10_08_0288 +
           16527666-16527837,16527915-16528132,16528491-16528554,
           16528749-16528821,16529294-16529371,16529573-16529730,
           16530222-16530390,16530531-16530990,16531098-16531478,
           16531834-16532037,16532318-16532451,16532937-16533120
          Length = 764

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 25/108 (23%), Positives = 47/108 (43%)
 Frame = +3

Query: 177 DLKDAVEAFDEALELTENEQDNVTSDEAVESVFVDAIMKTPPKLLHPQKXXXXXXXXXXX 356
           +L D  +  D+  + T+ E+D +  ++AVE     A  +T  K   P K           
Sbjct: 514 ELDDDDDEDDDDDDTTKGEEDEIDEEDAVEQTENQAGDETKDK---PSKGPKQHLQMIGV 570

Query: 357 XXTKNIEEKRVSDSKITDQVEEIESESKFYNNRALTKYATTYELEKFE 500
              K++E+  VS SK + +V EI+ +  ++    +  +    E   F+
Sbjct: 571 QLLKDLEKTSVS-SKKSKRVPEIDDDEDWFPEDPIEAFKVMRETRLFD 617


>02_05_0362 + 28291891-28292263,28292432-28292616
          Length = 185

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 272 VCRRYHENTTKIASPTKSYLSRTCRNTTCRDKKHRREK 385
           V  RY    T  + P+K Y S + +N   + KK +++K
Sbjct: 13  VKNRYRSQLTSFSGPSKKYCSLSVKNKKKKKKKKKKKK 50


>04_04_1163 -
           31398565-31398654,31398729-31398812,31398893-31399037,
           31399118-31399239,31399338-31399376,31399491-31399601,
           31399682-31399804,31399946-31400032,31400136-31400207,
           31400349-31400621,31400704-31400895,31400988-31401171,
           31401339-31401480,31401578-31401821,31401959-31402603,
           31403024-31403293
          Length = 940

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 222 SIPTLHRMLLQHLSSHIQPLCCVSNI 145
           S+P LH  +++HL+S I P  C SNI
Sbjct: 348 SVP-LHSEIVEHLASIIAPALCPSNI 372


>01_05_0808 - 25414486-25414677,25415114-25415290,25415839-25415928,
            25416016-25416081,25416170-25416240,25416375-25416450,
            25416567-25420098,25421464-25421834
          Length = 1524

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +3

Query: 366  KNIEEKRVSDSKITDQVEEIESESKFYNNRALTKYATTY--ELEKFEKNALLIFNQENIY 539
            +NI+EK+ S  K++   E +E    +Y      K ++T   E E  EK  +  F+ E + 
Sbjct: 773  ENIDEKKASQVKVSKLEESVE----YYETPNFQKSSSTAHGETETVEKEKMFSFSDE-LR 827

Query: 540  GYSPRKG-TEKDVESLT-VTFQKFGFEVVEHKDLTKDEV 650
              +   G TE   ESL     +KFG E   +  L  D V
Sbjct: 828  PQNKNIGITEAPPESLIHKEIKKFGTEEKAYITLEGDVV 866


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,371,839
Number of Sequences: 37544
Number of extensions: 261611
Number of successful extensions: 740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)