Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a10f
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.78 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.78 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 564 EKDVESLTVTFQKFGFEVVEHKDL 635
           E   E++TVTF   G + V+ KD+
Sbjct: 130 EVSSENMTVTFANLGIQCVKKKDI 153


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 564 EKDVESLTVTFQKFGFEVVEHKDL 635
           E   E++TVTF   G + V+ KD+
Sbjct: 130 EVSSENMTVTFANLGIQCVKKKDI 153


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 296 TTKIASPTKSYLSRTCRNTTCRDKKHRREKGIRF 397
           TT   + TKS + R   N+TC       +K +RF
Sbjct: 329 TTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRF 362


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 555 KGTEKDVESLTVTFQKFGFEVVEHKDLTKDEVLNEIKEFSSRDLRD 692
           KGT   VES     +   F+V+   D+T+  +L  I+        D
Sbjct: 112 KGTVTHVESRPSKKEGLQFDVLVKVDMTRQYLLQLIRNLRQSSALD 157


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -3

Query: 248 CYIVLFVFSQFQRFIECFYSIFQVIFNLFAAFQIFLTLVLCFRIRL 111
           C I +F  S+  R     + +   IF++  AF++ + ++  F  R+
Sbjct: 77  CVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFMERM 122


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -3

Query: 248 CYIVLFVFSQFQRFIECFYSIFQVIFNLFAAFQIFLTLVLCFRIRL 111
           C I +F  S+  R     + +   IF++  AF++ + ++  F  R+
Sbjct: 77  CVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFMERM 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,959
Number of Sequences: 438
Number of extensions: 3298
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)