Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a08r
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417...    33   0.39 
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451...    28   8.5  

>05_01_0500 -
           4171090-4171191,4171989-4172061,4172376-4172701,
           4173164-4173555,4174521-4174853,4177118-4177209,
           4178052-4178111,4178760-4178903,4180142-4180213,
           4180345-4180510,4180776-4180923
          Length = 635

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 16/48 (33%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
 Frame = -1

Query: 807 DLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWG-VITDARSGRLS 667
           + A  + NS++L EA++ S  +EF F+ EF+++++G ++++ +SG L+
Sbjct: 558 NFASDECNSIQL-EAVELSGPREFFFSPEFLVDMFGLLLSEVKSGLLA 604


>02_04_0121 -
           19943988-19944251,19944534-19944734,19944802-19945124,
           19945283-19945316,19945479-19945856,19946425-19946678,
           19946791-19946938,19947052-19947198,19947287-19947664
          Length = 708

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 401 RFHHHYLCLMNYFISN**YPA 339
           RFHHH+ CL+ +  S   YPA
Sbjct: 11  RFHHHHRCLLRHSSSPRRYPA 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,930,133
Number of Sequences: 37544
Number of extensions: 335625
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)