Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18a08r
(870 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016169-1|AAH16169.1| 333|Homo sapiens GIPC PDZ domain contain... 72 3e-12
BC012810-1|AAH12810.1| 333|Homo sapiens GIPC PDZ domain contain... 72 3e-12
BC004226-1|AAH04226.2| 300|Homo sapiens GIPC1 protein protein. 72 3e-12
BC000410-1|AAH00410.1| 333|Homo sapiens GIPC PDZ domain contain... 72 3e-12
AF089816-1|AAC67548.1| 333|Homo sapiens RGS-GAIP interacting pr... 72 3e-12
AF028824-1|AAB84249.1| 256|Homo sapiens Tax interaction protein... 72 3e-12
BC117314-1|AAI17315.1| 312|Homo sapiens GIPC PDZ domain contain... 60 1e-08
BC117312-1|AAI17313.1| 312|Homo sapiens GIPC PDZ domain contain... 60 1e-08
AB073738-1|BAB84712.1| 312|Homo sapiens PDZ domain protein GIPC... 60 1e-08
BC036075-1|AAH36075.1| 315|Homo sapiens GIPC PDZ domain contain... 59 2e-08
AK000082-1|BAA90933.1| 223|Homo sapiens protein ( Homo sapiens ... 59 2e-08
AB073737-1|BAB84711.1| 315|Homo sapiens PDZ domain protein GIPC... 59 2e-08
AC005175-1|AAC24304.1| 347|Homo sapiens R31449_1 protein. 50 1e-05
>BC016169-1|AAH16169.1| 333|Homo sapiens GIPC PDZ domain containing
family, member 1 protein.
Length = 333
Score = 71.7 bits (168), Expect = 3e-12
Identities = 34/66 (51%), Positives = 47/66 (71%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
+ LLES+MGI D+ELA+ M +L + K+N ELAEA+D L +F F DEF+ ++WG I
Sbjct: 268 VDDLLESYMGIRDTELAATMVELGKDKRNPDELAEALDER-LGDFAFPDEFVFDVWGAIG 326
Query: 690 DARSGR 673
DA+ GR
Sbjct: 327 DAKVGR 332
>BC012810-1|AAH12810.1| 333|Homo sapiens GIPC PDZ domain containing
family, member 1 protein.
Length = 333
Score = 71.7 bits (168), Expect = 3e-12
Identities = 34/66 (51%), Positives = 47/66 (71%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
+ LLES+MGI D+ELA+ M +L + K+N ELAEA+D L +F F DEF+ ++WG I
Sbjct: 268 VDDLLESYMGIRDTELAATMVELGKDKRNPDELAEALDER-LGDFAFPDEFVFDVWGAIG 326
Query: 690 DARSGR 673
DA+ GR
Sbjct: 327 DAKVGR 332
>BC004226-1|AAH04226.2| 300|Homo sapiens GIPC1 protein protein.
Length = 300
Score = 71.7 bits (168), Expect = 3e-12
Identities = 34/66 (51%), Positives = 47/66 (71%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
+ LLES+MGI D+ELA+ M +L + K+N ELAEA+D L +F F DEF+ ++WG I
Sbjct: 235 VDDLLESYMGIRDTELAATMVELGKDKRNPDELAEALDER-LGDFAFPDEFVFDVWGAIG 293
Query: 690 DARSGR 673
DA+ GR
Sbjct: 294 DAKVGR 299
>BC000410-1|AAH00410.1| 333|Homo sapiens GIPC PDZ domain containing
family, member 1 protein.
Length = 333
Score = 71.7 bits (168), Expect = 3e-12
Identities = 34/66 (51%), Positives = 47/66 (71%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
+ LLES+MGI D+ELA+ M +L + K+N ELAEA+D L +F F DEF+ ++WG I
Sbjct: 268 VDDLLESYMGIRDTELAATMVELGKDKRNPDELAEALDER-LGDFAFPDEFVFDVWGAIG 326
Query: 690 DARSGR 673
DA+ GR
Sbjct: 327 DAKVGR 332
>AF089816-1|AAC67548.1| 333|Homo sapiens RGS-GAIP interacting
protein GIPC protein.
Length = 333
Score = 71.7 bits (168), Expect = 3e-12
Identities = 34/66 (51%), Positives = 47/66 (71%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
+ LLES+MGI D+ELA+ M +L + K+N ELAEA+D L +F F DEF+ ++WG I
Sbjct: 268 VDDLLESYMGIRDTELAATMVELGKDKRNPDELAEALDER-LGDFAFPDEFVFDVWGAIG 326
Query: 690 DARSGR 673
DA+ GR
Sbjct: 327 DAKVGR 332
>AF028824-1|AAB84249.1| 256|Homo sapiens Tax interaction protein 2
protein.
Length = 256
Score = 71.7 bits (168), Expect = 3e-12
Identities = 34/66 (51%), Positives = 47/66 (71%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
+ LLES+MGI D+ELA+ M +L + K+N ELAEA+D L +F F DEF+ ++WG I
Sbjct: 191 VDDLLESYMGIRDTELAATMVELGKDKRNPDELAEALDER-LGDFAFPDEFVFDVWGAIG 249
Query: 690 DARSGR 673
DA+ GR
Sbjct: 250 DAKVGR 255
>BC117314-1|AAI17315.1| 312|Homo sapiens GIPC PDZ domain containing
family, member 3 protein.
Length = 312
Score = 59.7 bits (138), Expect = 1e-08
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
+ LLES+MGI D ELAS M + ++ ++ E A +D S L EF F DEF++E+W I
Sbjct: 247 VDDLLESYMGIRDPELASTMVETSKKTASAQEFARCLD-SVLGEFAFPDEFVVEVWAAIG 305
Query: 690 DAR 682
+AR
Sbjct: 306 EAR 308
>BC117312-1|AAI17313.1| 312|Homo sapiens GIPC PDZ domain containing
family, member 3 protein.
Length = 312
Score = 59.7 bits (138), Expect = 1e-08
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
+ LLES+MGI D ELAS M + ++ ++ E A +D S L EF F DEF++E+W I
Sbjct: 247 VDDLLESYMGIRDPELASTMVETSKKTASAQEFARCLD-SVLGEFAFPDEFVVEVWAAIG 305
Query: 690 DAR 682
+AR
Sbjct: 306 EAR 308
>AB073738-1|BAB84712.1| 312|Homo sapiens PDZ domain protein GIPC3
protein.
Length = 312
Score = 59.7 bits (138), Expect = 1e-08
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
+ LLES+MGI D ELAS M + ++ ++ E A +D S L EF F DEF++E+W I
Sbjct: 247 VDDLLESYMGIRDPELASTMVETSKKTASAQEFARCLD-SVLGEFAFPDEFVVEVWAAIG 305
Query: 690 DAR 682
+AR
Sbjct: 306 EAR 308
>BC036075-1|AAH36075.1| 315|Homo sapiens GIPC PDZ domain containing
family, member 2 protein.
Length = 315
Score = 58.8 bits (136), Expect = 2e-08
Identities = 28/63 (44%), Positives = 42/63 (66%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
I +LE +MGI D +LA+ M++ + K N E A A+D + L +F F DEF+ ++WGVI
Sbjct: 250 IDDVLELYMGIRDIDLATTMFEAGKDKVNPDEFAVALDET-LGDFAFPDEFVFDVWGVIG 308
Query: 690 DAR 682
DA+
Sbjct: 309 DAK 311
>AK000082-1|BAA90933.1| 223|Homo sapiens protein ( Homo sapiens
cDNA FLJ20075 fis, clone COL02542. ).
Length = 223
Score = 58.8 bits (136), Expect = 2e-08
Identities = 28/63 (44%), Positives = 42/63 (66%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
I +LE +MGI D +LA+ M++ + K N E A A+D + L +F F DEF+ ++WGVI
Sbjct: 158 IDDVLELYMGIRDIDLATTMFEAGKDKVNPDEFAVALDET-LGDFAFPDEFVFDVWGVIG 216
Query: 690 DAR 682
DA+
Sbjct: 217 DAK 219
>AB073737-1|BAB84711.1| 315|Homo sapiens PDZ domain protein GIPC2
protein.
Length = 315
Score = 58.8 bits (136), Expect = 2e-08
Identities = 28/63 (44%), Positives = 42/63 (66%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIELWGVIT 691
I +LE +MGI D +LA+ M++ + K N E A A+D + L +F F DEF+ ++WGVI
Sbjct: 250 IDDVLELYMGIRDIDLATTMFEAGKDKVNPDEFAVALDET-LGDFAFPDEFVFDVWGVIG 308
Query: 690 DAR 682
DA+
Sbjct: 309 DAK 311
>AC005175-1|AAC24304.1| 347|Homo sapiens R31449_1 protein.
Length = 347
Score = 49.6 bits (113), Expect = 1e-05
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = -1
Query: 870 ITGLLESFMGINDSELASQMWDLAEGKQNSMELAEAIDNSDLQEFGFTDEFIIE 709
+ LLES+MGI D ELAS M + ++ ++ E A +D S L EF F DEF++E
Sbjct: 295 VDDLLESYMGIRDPELASTMVETSKKTASAQEFARCLD-SVLGEFAFPDEFVVE 347
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,035,222
Number of Sequences: 237096
Number of extensions: 1968933
Number of successful extensions: 2766
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2751
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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