Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a08r
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.8  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      23   4.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   8.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 779 WNSQRLSITAIFKNL 735
           WN+ + SIT+ F+NL
Sbjct: 11  WNNYQSSITSAFENL 25


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 779 WNSQRLSITAIFKNL 735
           WN+ + SIT+ F+NL
Sbjct: 11  WNNYQSSITSAFENL 25


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 279 YYRDMRMSARPYNK 320
           YY   +M  +PYNK
Sbjct: 428 YYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 279 YYRDMRMSARPYNK 320
           YY   +M  +PYNK
Sbjct: 428 YYHSYKMHQKPYNK 441


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 653 LRLNLRKCTYCEL 615
           LR+N  +C YC L
Sbjct: 64  LRINRNRCQYCRL 76


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 653 LRLNLRKCTYCEL 615
           LR+N  +C YC L
Sbjct: 113 LRINRNRCQYCRL 125


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 140 FIKRSMFIVIHMYF*IAPINALSKNSVGIDYR 235
           F+  S++    ++F I   NA+S    G DY+
Sbjct: 2   FLNGSLYCFARLFFIIGFFNAISGAIKGNDYQ 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,010
Number of Sequences: 438
Number of extensions: 4972
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)