Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18a07r
         (839 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029266-1|ABK30903.1|  306|Drosophila melanogaster IP06458p pro...    33   0.64 
AE014297-2438|AAN13756.1|  906|Drosophila melanogaster CG7847-PB...    29   6.0  
AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA...    29   6.0  

>BT029266-1|ABK30903.1|  306|Drosophila melanogaster IP06458p
           protein.
          Length = 306

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 568 FTSIRSVRRTILREFYSYFTYPKYYNYVMIEINARIFTLAPYKNVTYRPHFNYL 729
           F   +++ R   +E +++      Y YV +  N  IFT  P KN +Y  +FN L
Sbjct: 79  FNEFKAMMREYFQEDFAFSFTRMIYEYVFLNPN-NIFTKEPTKNTSYPYNFNIL 131


>AE014297-2438|AAN13756.1|  906|Drosophila melanogaster CG7847-PB,
           isoform B protein.
          Length = 906

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 222 LQSSKSTLNNINTTFFQQYKSIQTDHNVMAAPWNPMQHLK*VLTEDNLPTHNYHH 386
           LQ + ++ +N N     Q +  Q     M++P    Q  + +  +  LP H++HH
Sbjct: 315 LQHNNTSSSNSNCHHSHQQQQQQQQQQHMSSPQQQYQQHQILHQQQQLPNHHHHH 369


>AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA,
           isoform A protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 222 LQSSKSTLNNINTTFFQQYKSIQTDHNVMAAPWNPMQHLK*VLTEDNLPTHNYHH 386
           LQ + ++ +N N     Q +  Q     M++P    Q  + +  +  LP H++HH
Sbjct: 595 LQHNNTSSSNSNCHHSHQQQQQQQQQQHMSSPQQQYQQHQILHQQQQLPNHHHHH 649


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,860,786
Number of Sequences: 53049
Number of extensions: 633471
Number of successful extensions: 1410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)