Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17p22r
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.2  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   3.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 167 TPVVTGCVRPL*DAMLTRDPRRKPIPHVVTTTALRVI 277
           TP  T   + L  A + R+ RR P PH  T    RV+
Sbjct: 161 TPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKPRVL 197


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 690 ISLHSLPCWRLFVHTAGWWSPHLELRPGVP 601
           +SLH    WR F + A   +P+ +   G P
Sbjct: 301 LSLHGQLLWREFFYCAATKNPNFDRMQGNP 330


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 256 DHCSSGNTSCRHLL-IPGGISRSIPVRYCWGRC 351
           D C +  T   H L  PG + + IP   C GRC
Sbjct: 27  DECQA--TPVIHFLQYPGCVPKPIPSYACRGRC 57


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -1

Query: 202 LQWTYTAGNNWGVCPNGTGALGCGNQET 119
           L+W    G  WG  P+    +   N +T
Sbjct: 283 LKWLVNWGEQWGFLPSKDSLVFVDNHDT 310


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -3

Query: 758 KIIRNIECFSNFNTKHEKYAVVIFPC 681
           K++ N+E   N+N   + Y  + + C
Sbjct: 107 KLLCNVEAEENYNLLEDIYETLSYDC 132


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 602 GTPGRSSRCGLHHPAVCTNSRQQGN 676
           G  G +S   +H P V TNS    N
Sbjct: 490 GYDGAASTAVIHEPVVETNSSPSPN 514


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 690 YDNCIFLMFCVEI*KTLDITNY 755
           Y NCI  M    +  T+ I NY
Sbjct: 297 YFNCIMFMVASSVVSTILILNY 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,723
Number of Sequences: 438
Number of extensions: 5791
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)