Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17p08r
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.49 
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    30   0.49 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.6  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    27   2.6  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   6.1  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   8.0  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 342 NINENLLRAGIERTNLMFGGLSRLPDKVVTVMGSHDPWSPMGPNVDHQHHLAPV 181
           ++ E  L    E    ++G LS  PD  +T + + DP+   G + D +H +A V
Sbjct: 674 SLEEGALLKNSESLESIYGYLSEEPDPALTKLNTEDPFWTKGSS-DDEHTIASV 726


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 180 FVVPQISHCRAIRPTGDSETEELERTKVAVLQ 85
           F  P   HC+A+ P  +S  +ELE+  +++++
Sbjct: 46  FYAPWCGHCKALAPEYESAADELEKDGISLVE 77


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -2

Query: 738  INARSTLDLATFFWYGITETFAYLVQYAVPGDIPNACSVITNTSVANPVQR 586
            IN R  LDL +  +YGI +           G+I N  +  +N  ++  + R
Sbjct: 1151 INIREILDLLSILYYGIRDVHTLFPDKHFRGNIENILTDFSNWKLSAKLNR 1201


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/27 (33%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
 Frame = +3

Query: 765 TLVPVLRSWS-ITMSVVAPLLLCWISN 842
           T V +L +W+ +T+S+V+P+++ W+++
Sbjct: 3   TTVEMLTTWNPVTVSLVSPVIIYWVAS 29


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 34   RXFARAAVYAGHKALHPLQH-CDL 102
            + F+   +++ HKALHP  H C++
Sbjct: 1172 KDFSNEGIFSNHKALHPDDHICEV 1195


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -2

Query: 750 TCSPINARSTLDLATFFWYGITETFAYLVQYAVPGDIPNACSVITNTSVANP 595
           T SPI       L     +GI +T     +   PG IP +    +N S A P
Sbjct: 310 TVSPIGTSFRQSLPDISAFGIPKTETNPSEVVAPGTIPISVLPTSNFSAATP 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,643,656
Number of Sequences: 5004
Number of extensions: 78506
Number of successful extensions: 223
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)