Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17p08r
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.7  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 668 KYANVSVIPYQKNVAR 715
           +Y N SV PY KN  +
Sbjct: 437 RYPNASVTPYNKNYTK 452



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 608 VSLIRCSVWLIG*PHRAGHSHVSRQDTV 525
           V ++   VW+I  P +A H + +R+D +
Sbjct: 778 VQILINGVWMIIDPAKAMHHYPTREDNL 805


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -2

Query: 234 PWSPMGPNVDHQHHLAPVFVVPQ 166
           PW PM   +    H+ P    PQ
Sbjct: 139 PWVPMQEQIPRFRHIGPSTPFPQ 161


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 409  PALPDYNTSRILPPN 365
            P +PD NTS  LP N
Sbjct: 1061 PMIPDDNTSLALPKN 1075


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 792 SITMSVVAPL-LLCWISNFC 848
           +IT+ V+  + L+CW+  FC
Sbjct: 271 AITVGVIMGVFLICWVPFFC 290


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 246 GSHDPWSPMGPNVDHQHH 193
           G+H     MGP   H HH
Sbjct: 339 GNHTMGPTMGPPHHHHHH 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,285
Number of Sequences: 438
Number of extensions: 5316
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)