Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17p08f
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 82 4e-16
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 73 2e-13
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 61 8e-10
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 58 7e-09
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 31 0.71
07_03_0083 - 13231110-13231517 30 2.2
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 82.2 bits (194), Expect = 4e-16
Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 3/191 (1%)
Frame = +3
Query: 144 EGWVDVRLNHFNAANTATFPMRYYYNNEFASENIVIFVGGEWAISPGWVRSGLAYELAEA 323
E W+D RL+HF+ + F RYY ++ + +F+ S + + L++
Sbjct: 52 ERWMDQRLDHFSPTDHRQFKQRYYEFADYHAGGGPVFLRICGESSCNGIPNDYLAVLSKK 111
Query: 324 TRAGLFYTEHRYYGLTRPTEDTGLEFLRFLTVDQALADLAQFIQY---VKSDAFEAGQFR 494
A + EHRYYG + P E E LRFL+ QAL DL F Q+ + + +
Sbjct: 112 FGAAVVTPEHRYYGKSSPFESLTTENLRFLSSKQALFDLVAFRQHYQEILNARYNRSSGF 171
Query: 495 QAKVALVGCSYAGSMATWMRLAYPHLVDAVFSDSGPLHAQEDFPEYLEVITEAIKVQGGQ 674
+ G SY+G+++ W RL +PHL + SG + A +F ++ + + ++ G
Sbjct: 172 DNPWFVFGVSYSGALSAWFRLKFPHLTCGSLASSGVVLAVYNFTDFDKQVGDS----AGP 227
Query: 675 NCLSSIEEAVQ 707
C ++++E +
Sbjct: 228 ECKAALQEVTR 238
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 72.9 bits (171), Expect = 2e-13
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 6/182 (3%)
Frame = +3
Query: 180 AANTATFPMRYYYNNEF---ASENIVIFVGGEWAISPGWVRSGLAYELAEATRAGLFYTE 350
+A+ F RYY ++ I +++ GE + + G S LA +A+ A + E
Sbjct: 83 SADHRQFKQRYYEFLDYYRAPKGPIFLYICGESSCN-GIPNSYLAV-MAKKFGAAVVSPE 140
Query: 351 HRYYGLTRPTEDTGLEFLRFLTVDQALADLAQFIQYVKSDAFEAGQFRQAKVA---LVGC 521
HRYYG + P E E LRFL+ QAL DLA F QY + + A R + + G
Sbjct: 141 HRYYGKSSPFESLTTENLRFLSSKQALFDLAVFRQYYQ-ETLNAKYNRSGADSSWFVFGG 199
Query: 522 SYAGSMATWMRLAYPHLVDAVFSDSGPLHAQEDFPEYLEVITEAIKVQGGQNCLSSIEEA 701
SYAG+++ W RL +PHL + SG + + ++ ++ + I E+ G C ++++E
Sbjct: 200 SYAGALSAWFRLKFPHLTCGSLASSGVVLSVYNYTDFDKQIGES----AGPECKAALQET 255
Query: 702 VQ 707
+
Sbjct: 256 TK 257
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 61.3 bits (142), Expect = 8e-10
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Frame = +3
Query: 348 EHRYYGLTRP--TEDTGL---EFLRFLTVDQALADLAQFIQYVKSDAFEAGQFRQAKVAL 512
+HRYYG + P ++D + L +LT +QALAD A + +K + G + V L
Sbjct: 160 QHRYYGESMPFGSKDKAYNNSKSLAYLTAEQALADYAVLLTDLKKNLSSEG----SPVVL 215
Query: 513 VGCSYAGSMATWMRLAYPHLVDAVFSDSGPLHAQED 620
G SY G +A WMRL YPH+ + S P+ ED
Sbjct: 216 FGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFED 251
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 58.0 bits (134), Expect = 7e-09
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Frame = +3
Query: 348 EHRYYGLTRP---TEDTGLEFLRFLTVDQALADLAQFIQYVKSDAFEAGQFRQAKVALVG 518
+HR+YG ++P ++ E L +LT QALAD A I +K + + V + G
Sbjct: 143 QHRFYGESKPFGNESNSSPEKLGYLTSTQALADFAVLITSLKHNLSAVS----SPVVVFG 198
Query: 519 CSYAGSMATWMRLAYPHLVDAVFSDSGPLHAQEDF----PEYLEVITEAIKVQGGQNCLS 686
SY G +A+W RL YPH+ + S P+ Q D+ + E +++ K + NC S
Sbjct: 199 GSYGGMLASWFRLKYPHVTIGAVASSAPI-LQFDYITPWSSFYEAVSQDYKSE-SFNCFS 256
Query: 687 SIEEA 701
I+ A
Sbjct: 257 VIKAA 261
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 186 NTATFPMRYYYNNEFA-SENIVIFVGGE 266
N P+R++YN EFA S IV +VGG+
Sbjct: 151 NLEILPVRFHYNGEFANSRRIVQYVGGD 178
>07_03_0083 - 13231110-13231517
Length = 135
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 520 HPTKATFACLNCPASKASLLTYCMNCARSA 431
HP+ AT AC+ P+S+AS T R A
Sbjct: 75 HPSNATVACIGSPSSQASASTATSRLMRKA 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,001,889
Number of Sequences: 37544
Number of extensions: 450267
Number of successful extensions: 1450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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