Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17p02f
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406     32   0.43 
01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855...    29   4.0  
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067...    29   5.2  
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    29   5.2  
07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444...    28   9.2  
02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196           28   9.2  

>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
          Length = 351

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +1

Query: 382 RETARSTRAWGPYCRYTAARPKSWSDALRARTTTAACSPTNCWRRSRNWPTLDSTRILLR 561
           R  A   R  GP     A   +SW+ +       A  SP  C+RR + W +L S+    R
Sbjct: 237 RPHANVRRTNGPRSSPAAMAMESWARSASDAAADAGASP-GCFRRIKIWSSLSSSSSCSR 295

Query: 562 RSS 570
           RS+
Sbjct: 296 RSA 298


>01_06_1664 -
           38984545-38984615,38984706-38984802,38985362-38985523,
           38985736-38985825,38986125-38986226,38986373-38986446,
           38986587-38986615,38986766-38986989
          Length = 282

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +3

Query: 318 TVLNENYKGIVESMSIPAEIHERNGKKYASVGSILPIHCC--PPEELERRAESTHHYCGV 491
           T L+  +K  V  M     IH  NGK+YA    I  I C      ++  +  S       
Sbjct: 162 TALDLYFKYNVTEMLASGGIHVSNGKQYALTDVIDAIKCAFGASPQIVCKKGSVEELRLC 221

Query: 492 FTDELLAPLEELAYVRLDENTAEKVFINR 578
           F D+ L PL+ L     +EN ++K +  R
Sbjct: 222 F-DKDLKPLDCLTTTATNENVSKKKYCPR 249


>08_02_0468 -
           17505905-17506002,17506295-17506424,17506662-17506778,
           17506881-17506959,17507546-17507654,17507857-17507969,
           17510510-17510570,17511562-17511742,17512903-17512960,
           17514292-17514497,17514582-17514671,17514752-17514813,
           17514911-17514979,17515330-17515334,17516282-17516454
          Length = 516

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 674 RAGDVPVRRLEGRRAPPLRQVPVA*-HYQYALGSVYEDLLSSILVESNVGQFLERR 510
           +A  +P+R    R   P  ++  A  HY Y+L S+YE +L  I+  S     ++RR
Sbjct: 157 KAATMPIRSRGVRWNKPRYELTAALFHYSYSLQSLYESILQEIM-NSAPSNSIQRR 211


>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -3

Query: 427 IGSMDPTLAYFLPFLSCISAGILIDSTMPL*FSFSTVRLDIAVFLENKSEN 275
           +G M   + +F  F +C   G+L +S++     F T+R+D+ +   + ++N
Sbjct: 524 LGMMRWGVVFFFSFSNCSICGLLYESSVKHIVFFCTIRVDLVLHTFDGNKN 574


>07_01_0597 +
           4438858-4439847,4439936-4440067,4440397-4441176,
           4441359-4441646,4441710-4441808
          Length = 762

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -2

Query: 743 DGIVVVFLRHNDGDDAPALVDDGRAGDVPVRRLEGRRAPPLRQVPVA 603
           DG  V+F+R  D D+    V   R  D P+R    RR+ P   +PVA
Sbjct: 200 DGDSVIFMRRRDDDELYVGVRRQRTLDKPLRT---RRSRPPTPLPVA 243


>02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196
          Length = 933

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 444 EELERRAESTHHYCGVFTDELLAPLEELAYVRLDENTAEKV 566
           EEL+R   + H++  + ++ ++A   EL Y+ L     +++
Sbjct: 146 EELKRAGSNPHNFANIVSNIIIAEDPELGYITLQNERLKEI 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,827,020
Number of Sequences: 37544
Number of extensions: 325182
Number of successful extensions: 1092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)