Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17p01f
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0105 + 6644264-6644344,6645573-6646097,6646185-6646410,664...    29   4.3  
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486...    29   4.3  
03_01_0291 - 2250349-2250966,2251062-2251444,2251604-2251981,225...    29   4.3  
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89...    29   5.6  
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886...    28   7.4  
01_05_0677 - 24202037-24202444,24202499-24202795,24202960-242030...    28   9.8  

>05_02_0105 +
           6644264-6644344,6645573-6646097,6646185-6646410,
           6646498-6646875,6647035-6647417,6647513-6648130
          Length = 736

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 714 PPFKSIRITLLQGRNRQGDTCPRRFTRFLKTNNKTLIK 601
           PP++ +R  L + R  QG  CP+    +  ++ +T I+
Sbjct: 295 PPYRRVRYHLKEFRGPQGPKCPKELFNYRHSSLRTTIE 332


>04_01_0097 -
           998766-999383,999479-999861,1000021-1000398,
           1000486-1000711,1000799-1001323,1003032-1003164,
           1004353-1004435,1004645-1005349,1005483-1005556,
           1006290-1006392,1006485-1006727
          Length = 1156

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 714 PPFKSIRITLLQGRNRQGDTCPRRFTRFLKTNNKTLIK 601
           PP++ +R  L + R  QG  CP+    +  ++ +T I+
Sbjct: 715 PPYRRVRYHLKEFRGPQGPKCPKELFNYRHSSLRTTIE 752


>03_01_0291 -
           2250349-2250966,2251062-2251444,2251604-2251981,
           2252147-2252294,2252382-2252906,2253990-2254112,
           2254151-2254205,2254510-2254640
          Length = 786

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 714 PPFKSIRITLLQGRNRQGDTCPRRFTRFLKTNNKTLIK 601
           PP++ +R  L + R  QG  CP+    +  ++ +T I+
Sbjct: 345 PPYRRVRYHLKEFRGPQGPKCPKELFNYRHSSLRTTIE 382


>04_01_0082 +
           897026-897028,897101-897350,898454-898608,898686-898967,
           899078-899160,899335-899485,899896-899952,900279-900479
          Length = 393

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -2

Query: 794 AHRHQRRKYRHPP*DMSSNFFTVQRLPHPSNR 699
           AHR Q+++ + P  + SS   T++ LP+PSN+
Sbjct: 261 AHRKQQQQKQEPS-ESSSERITMKNLPNPSNQ 291


>08_02_0095 -
           12285976-12286037,12286111-12287229,12287494-12288604,
           12288695-12288757,12288851-12288913,12289268-12289318,
           12289538-12289617,12290078-12290164,12290349-12290435,
           12290889-12290975,12292106-12292308,12292756-12292922
          Length = 1059

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 654 CPRRFTRFLKTNNKTLIKPKLKIGTL 577
           CPRR  +FLK++    IK K  I TL
Sbjct: 509 CPRREAKFLKSHKNMTIKEKRLIRTL 534


>01_05_0677 -
           24202037-24202444,24202499-24202795,24202960-24203009,
           24204534-24204589,24205751-24206040,24206100-24206488,
           24210578-24210818
          Length = 576

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/52 (23%), Positives = 33/52 (63%)
 Frame = +1

Query: 76  KNVIDMSIQIDLNIIVSFKEYGSKPALNKG*YLTCYLSKMSFRRVL*LPMEY 231
           +++ D+   + ++ IV+ K++ ++  + +  Y TC +S+  FRR+L + +++
Sbjct: 409 ESLYDLFKTVGIDRIVTLKQHYNEDLIRQF-YATCSISRRQFRRLLNIRLDF 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,780,645
Number of Sequences: 37544
Number of extensions: 344533
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)