Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17o24f
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0574 - 7450124-7450525,7450957-7451322                           30   1.7  
04_04_0783 - 28040828-28041615,28041942-28043589                       29   3.8  
08_01_0545 - 4740883-4740902,4741169-4741286                           29   5.1  
02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433...    29   5.1  
02_05_0883 - 32481502-32483085                                         28   6.7  
10_07_0194 - 13957709-13957925,13960065-13960129,13960281-139604...    28   8.8  

>04_01_0574 - 7450124-7450525,7450957-7451322
          Length = 255

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = -1

Query: 329 RRRYIFYSGLDGRSATWAGIADRFRAHLRCLNCDELLSRHXGTDMI*ICLYLV 171
           RR  I  +G   R  T + I +R R  L C+NCDE  SR  G + +  CL+L+
Sbjct: 117 RRGTIVVAGCTVRRLTPSEIDERRRKVL-CINCDETYSR--GHNKVCKCLFLL 166


>04_04_0783 - 28040828-28041615,28041942-28043589
          Length = 811

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 343 VLYSFAVYVAGPVLAFLIAAKAAETPHTTVRTAA 444
           + YS+A    GP+L  L+A +AA    TT  T A
Sbjct: 507 LFYSYATVAGGPLLMALVAGEAAHNFETTPPTDA 540


>08_01_0545 - 4740883-4740902,4741169-4741286
          Length = 45

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -1

Query: 458 APDIRAAVRTVVCGVSAAFAAIRNASTGP 372
           AP++ AAV   VC VSAA AA   AS  P
Sbjct: 7   APEMGAAVVAGVCVVSAAVAAAAAASPSP 35


>02_05_0345 -
           28142434-28142658,28143087-28143158,28143252-28143371,
           28143483-28143674,28144919-28145017,28145448-28145594,
           28146310-28146513
          Length = 352

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -1

Query: 326 RRYIFYSGLDGRSATWAGIADRFRAHLRCLNCDELL 219
           R Y   SG DGRSA  AG   R   H    +CDE L
Sbjct: 11  RVYSSVSG-DGRSANGAGSGKRVGTHNGSFHCDEAL 45


>02_05_0883 - 32481502-32483085
          Length = 527

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +1

Query: 199 SVPLCRLNSSSQFKHRKWALNLSAIPAQVAERPSRPE*NMYRRRKPTCVLYSFAVYVAGP 378
           SVP C   ++S   HR + + + A P+    +P +      RRR P  V  S+   +A P
Sbjct: 16  SVPTCPRGNASALSHRPYLMAVVAPPSLALPQPPQNPTPKPRRRPPRDVA-SWTSAIARP 74

Query: 379 VLAFLIAAKAA 411
                + A AA
Sbjct: 75  AKQGDLPAAAA 85


>10_07_0194 -
           13957709-13957925,13960065-13960129,13960281-13960454,
           13960847-13960889,13961081-13961225,13961305-13961413,
           13961694-13961822,13961935-13962031,13962639-13962703,
           13963275-13963439
          Length = 402

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 19  DSRLWCSYNRITGNLVRDLCLT 84
           +S+ WC   R  G++V DLC T
Sbjct: 335 ESQAWCGLTRSNGDVVADLCGT 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,302,467
Number of Sequences: 37544
Number of extensions: 312070
Number of successful extensions: 702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)