Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17o24f
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.98 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.3  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   3.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 334 PTCVLYSFAVYVAGPVLAFLIAAKAAETPHTTVRTAAR 447
           P+C    + +  A P+LA  +AA +++   T++  A R
Sbjct: 99  PSCRRQRYNIAAANPLLAEKLAAPSSQASPTSIPYATR 136


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 651 SNQDNNNYERNSINFINAQY 592
           +N +NNNY  N  N+ N  Y
Sbjct: 327 NNYNNNNYNNNYNNYNNNNY 346


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 195 HVGPXVPTQQFITVQAPQMGP 257
           H+GP  P  QFI   A +  P
Sbjct: 152 HIGPSTPFPQFIPPNAYKFRP 172


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 648 NQDNNNYERN 619
           NQDNN+Y  N
Sbjct: 419 NQDNNHYNHN 428


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 67  ELNSQLYDYTNTTIDCLF 14
           +LNS L   T  ++DC F
Sbjct: 549 DLNSGLNKITRNSLDCFF 566


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 67  ELNSQLYDYTNTTIDCLF 14
           +LNS L   T  ++DC F
Sbjct: 549 DLNSGLNKITRNSLDCFF 566


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 648 NQDNNNYERNSIN 610
           N +NNNY  N+ N
Sbjct: 97  NYNNNNYNNNNYN 109


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 648 NQDNNNYERNSIN 610
           N +NNNY  N+ N
Sbjct: 97  NYNNNNYNNNNYN 109


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 648 NQDNNNYERNSIN 610
           N +NNNY  N+ N
Sbjct: 332 NYNNNNYNNNNYN 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,698
Number of Sequences: 438
Number of extensions: 4112
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)