Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17o12r
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   2.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   2.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.6  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   8.0  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 332 RRTLSASYCNPEV---SSLHFGCKLERYQLCVCIRYAQVSQTHTCTASWQPRSELVVLET 502
           ++ LSA+Y N E+   S       LER  L       Q S THT   +W+ +  + +L +
Sbjct: 459 KQILSAAY-NVELHNSSPFSIYSFLERLNLIFMSSSLQWSSTHTLDVAWRRKVTIEILNS 517


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 332 RRTLSASYCNPEV---SSLHFGCKLERYQLCVCIRYAQVSQTHTCTASWQPRSELVVLET 502
           ++ LSA+Y N E+   S       LER  L       Q S THT   +W+ +  + +L +
Sbjct: 497 KQILSAAY-NVELHNSSPFSIYSFLERLNLIFMSSSLQWSSTHTLDVAWRRKVTIEILNS 555


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 400 EISAMRLHKICTGISDPYLYCQLAAS*RARCT*DRLSAIIPVMTHPILSV 549
           E+ A+R  K  T   +PYL      + R +     ++ IIP M    L+V
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTV 263


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 400 EISAMRLHKICTGISDPYLYCQLAAS*RARCT*DRLSAIIPVMTHPILSV 549
           E+ A+R  K  T   +PYL      + R +     ++ IIP M    L+V
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTV 263


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 400 EISAMRLHKICTGISDPYLYCQLAAS*RARCT*DRLSAIIPVMTHPILSV 549
           E+ A+R  K  T   +PYL      + R +     ++ IIP M    L+V
Sbjct: 210 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTV 259


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 765 SIYSISKIRLKFTKILQC 818
           S  S + + LK TKI QC
Sbjct: 105 SAISDTNVHLKITKIFQC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,717
Number of Sequences: 438
Number of extensions: 4038
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)