Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17o12f
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 229 2e-61
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 135 5e-33
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 132 6e-32
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 130 1e-31
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 120 2e-28
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 115 6e-27
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 109 5e-25
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 29 0.65
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 8.0
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 229 bits (561), Expect = 2e-61
Identities = 111/207 (53%), Positives = 145/207 (70%), Gaps = 1/207 (0%)
Frame = +1
Query: 85 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVT 264
GFDR IT+FSPEGRLYQVEYA KA N G+TSV + G + A V +Q+KVPD+L+D +V
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 265 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 444
H+F +T IGCVMTG IAD+R+QV RAR EAA ++YK G +P +L +R+A+I+QV TQ
Sbjct: 66 HVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQ 125
Query: 445 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRS 624
A MRPLG +M L+A DDE GP ++K DP+G+Y YKA +AG K + +LEK+ KK
Sbjct: 126 RAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDG 185
Query: 625 DLST-DDAIQLAISCLSQVLSVDFKSS 702
S D ++ I L LS DFKS+
Sbjct: 186 IPSNLTDTVETGIQALMSSLSTDFKST 212
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 135 bits (327), Expect = 5e-33
Identities = 77/203 (37%), Positives = 119/203 (58%), Gaps = 3/203 (1%)
Frame = +1
Query: 82 AGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRK-VPDRLLDPVS 258
+G+DR +++FSP+GRL QVEY +A+ +G T++ALRG + V+ +RK VP L VS
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRG-TTAIALRGNECIVIGVERKNVPK--LQNVS 58
Query: 259 VTHLFALTDRIGCV-MTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQV 435
A+ D C+ G+ AD+R + +AR EA N + + + L R +A + Q
Sbjct: 59 NFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQK 118
Query: 436 YTQNAEMRPLGCSMMLIAYD-DEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKL 612
YTQ+ +RP G S ++ +D + P VY+T+P+G Y ++KA A G + YLEK
Sbjct: 119 YTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNW 178
Query: 613 KKRSDLSTDDAIQLAISCLSQVL 681
K+ LS D+ I LA+S L +V+
Sbjct: 179 KE--GLSRDETIHLAVSSLLEVV 199
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 132 bits (318), Expect = 6e-32
Identities = 77/194 (39%), Positives = 110/194 (56%), Gaps = 2/194 (1%)
Frame = +1
Query: 100 ITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFAL 279
+T FSP G+L Q+EYAL A+N G+TSV ++ TD V+A ++K L S+ + A+
Sbjct: 9 LTTFSPNGKLVQIEYALNAVN-AGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAI 67
Query: 280 TDRIGCVMTGMIADSRSQVQRARYEAANWQYK--YGSEIPVHILCRRIADISQVYTQNAE 453
T IG V +GM D R V ++R + A YK Y P IL + IA + Q TQ+
Sbjct: 68 TPDIGMVYSGMGPDFRVLVDKSR-KVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGG 126
Query: 454 MRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSDLS 633
+RP G S+ L+A DE GP +Y+ DPSG Y ++KA A G + +LEK+ +L
Sbjct: 127 VRPFGVSL-LVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRY--NDELE 183
Query: 634 TDDAIQLAISCLSQ 675
DDA+ AI L +
Sbjct: 184 LDDAVHTAILALKE 197
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 130 bits (315), Expect = 1e-31
Identities = 70/202 (34%), Positives = 115/202 (56%), Gaps = 1/202 (0%)
Frame = +1
Query: 79 SAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD-PV 255
S +D TIFSPEGRLYQVEYAL+AIN G+ ++ + D V+AA++KV +LL+
Sbjct: 2 SRSYDSRTTIFSPEGRLYQVEYALEAINHAGV-ALGIVAKDGIVLAAEKKVTSKLLEQEE 60
Query: 256 SVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQV 435
S L+ + D + C + G+ AD+ + AR + + E+P L RR+ D+ Q
Sbjct: 61 SAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQG 120
Query: 436 YTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLK 615
YTQ +RP G S + +D G +++++PSG Y S++A + G + + + ++ K
Sbjct: 121 YTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYK 180
Query: 616 KRSDLSTDDAIQLAISCLSQVL 681
D++ D+A +A+ LS+ L
Sbjct: 181 --DDINLDEASAMAVKFLSKTL 200
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 120 bits (289), Expect = 2e-28
Identities = 67/204 (32%), Positives = 117/204 (57%), Gaps = 6/204 (2%)
Frame = +1
Query: 88 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 267
+DR + FSPEGRL+QVEYA++AI G T++ ++ DA V+ ++++ L++ SV
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKDAVVLGVEKRLTSPLMESHSVEK 66
Query: 268 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 447
LF + IGC ++G+ AD+R+ ++ AR + N ++ Y + + I D++ + +
Sbjct: 67 LFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEG 126
Query: 448 AE------MRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKK 609
+ RP G + +LIA DE GP +Y ++PSG Y Y+A A G+ + + L K+
Sbjct: 127 EDGEERIMSRPFGVA-LLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKE 185
Query: 610 LKKRSDLSTDDAIQLAISCLSQVL 681
K D++ ++A L + L QV+
Sbjct: 186 FHK--DMTLEEAEVLILKVLRQVM 207
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 115 bits (277), Expect = 6e-27
Identities = 67/195 (34%), Positives = 101/195 (51%)
Frame = +1
Query: 85 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVT 264
G+D + FSP+GRL+Q EYA KA+ T + ++ D ++A ++ V +LL P
Sbjct: 7 GYDLGL-FFSPDGRLFQAEYAYKAVENAS-TCIGIKCEDGVILALEKVVTSKLLKPRVNN 64
Query: 265 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 444
+ ++ IG TG I D + V+RAR EA +W+ YGS IP ++ R+ + Q++T
Sbjct: 65 RIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTC 124
Query: 445 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRS 624
+ +RP G + YD E GP +Y +P+G Y Y AAG LEK S
Sbjct: 125 YSSVRPFGVMSFVATYDSE-GPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEK--LNFS 181
Query: 625 DLSTDDAIQLAISCL 669
L DA++ A L
Sbjct: 182 SLKMKDAVKEAARIL 196
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 109 bits (261), Expect = 5e-25
Identities = 66/201 (32%), Positives = 102/201 (50%)
Frame = +1
Query: 88 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 267
+D T +SP+GRL+QVEYAL+AI QG T + T A +VA +R + L
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEE--LSSYQ-KK 62
Query: 268 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 447
L + D IG + G+ D+R + EA + + + IPV L ++A+ +Q+ TQ
Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQE 122
Query: 448 AEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSD 627
RP G ++I Y DE+GP + + PSG Y + G+++ Y+E+ L D
Sbjct: 123 YGRRPYGVGFLVIGY-DESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPD 181
Query: 628 LSTDDAIQLAISCLSQVLSVD 690
S ++ I A+ L LS D
Sbjct: 182 SSREELILSALRALRDTLSKD 202
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 29.1 bits (62), Expect = 0.65
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = +1
Query: 307 GMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLI 486
GM +R+ Q +E +W Y + V LCR + ++ N + + LI
Sbjct: 606 GMCPYTRAVSQHVEWENDSWMYVLNVSLQVAKLCRHVGNVFMELNTNKLANAINYLISLI 665
Query: 487 AY 492
Y
Sbjct: 666 LY 667
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 361 WQPRSELVVLETGYQQSSR 305
WQP S + L TGY ++R
Sbjct: 205 WQPDSSQIFLTTGYDSTAR 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,949
Number of Sequences: 5004
Number of extensions: 49188
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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