Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17o11f
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    36   0.005
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.77 
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    29   0.77 

>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 629 LMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFIIFG 793
           L I +   CL  V V FY + R L   F ++ S++LL+Q T       C  ++ G
Sbjct: 163 LGIVSKTYCLAFVPVSFYQISRGLLLPFTILLSFVLLKQKTRLFPFGGCLLVMLG 217


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 611  LAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVV 721
            L+I YT+     N+C+K  G+ FYY   S   +F+VV
Sbjct: 1307 LSICYTI-----NICVKVYGLSFYYFFHSFWNMFDVV 1338


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 27/121 (22%), Positives = 50/121 (41%)
 Frame = +2

Query: 425 VNKTLFSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMKKV 604
           +NK +FS   +  + PLF++  Q ++     F        P      K     ++   + 
Sbjct: 70  MNKWIFSESKMDFQFPLFLSSCQMLVQMG--FAKLTILAFPRYQPNKKDNFSWLEYFYRA 127

Query: 605 IPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFI 784
              A++  L I  +N  L+ + + FY + RS   +F   FS ++ R       +LC   +
Sbjct: 128 GICALVTGLDIGLSNASLETITLSFYTMCRSSILIFVFFFS-VIFRIEMFDWILLCITLV 186

Query: 785 I 787
           I
Sbjct: 187 I 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,504
Number of Sequences: 5004
Number of extensions: 71669
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)