Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17o11f
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0687 - 6057023-6058051 40 0.002
02_04_0601 + 24255264-24255420,24256228-24256234,24256803-242568... 40 0.003
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850... 38 0.012
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337 34 0.15
02_01_0410 + 2996779-2997888 33 0.27
06_01_0615 - 4454099-4454266,4454366-4454509,4454632-4454790,445... 32 0.61
03_06_0763 + 36081546-36081669,36081755-36082170,36082280-360823... 31 1.1
06_02_0039 - 10873398-10873680,10874505-10874671,10874807-108749... 30 2.5
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813... 29 3.3
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 29 3.3
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 29 4.3
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 29 5.7
04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547 28 7.6
01_04_0054 - 15456668-15459691 28 7.6
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 10.0
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 28 10.0
>08_01_0687 - 6057023-6058051
Length = 342
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +2
Query: 575 PWSMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATS 754
P+++ KK P A+++ L I TN LKH V + V RSLT + + +Q
Sbjct: 64 PFNLQTAKKFAPAALVFYLAIFTNTHLLKHANVDTFIVFRSLTPLLVAIADTAFRKQPCP 123
Query: 755 SRCILCCAFIIFG 793
S+ I G
Sbjct: 124 SKLTFVSLVTILG 136
>02_04_0601 +
24255264-24255420,24256228-24256234,24256803-24256851,
24256954-24257087,24257464-24257594,24257679-24257723,
24257814-24257911,24258340-24258396,24258865-24258939
Length = 250
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +2
Query: 590 VMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCIL 769
++ + PL++ Y L + + ++ V VP Y R T VF + + L +Q + I
Sbjct: 56 ILLRTTPLSLAYLLYMLASMESVRGVNVPMYTTLRRTTVVFTMTMEYFLAKQKHTPPIIG 115
Query: 770 CCAFIIFGXYL 802
A I+FG ++
Sbjct: 116 SVALIVFGAFI 126
>05_03_0110 +
8500204-8500460,8502544-8502612,8502725-8502790,
8502885-8502963,8504270-8504390,8504486-8504581,
8505403-8505515,8505612-8505689,8507777-8507893,
8508194-8508293,8508463-8508563,8509093-8509110
Length = 404
Score = 37.5 bits (83), Expect = 0.012
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = +2
Query: 554 FSFPKGTPWSMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWI 733
F PK P + V+K + P+A+ + + T+ + V V F + ++L FN S
Sbjct: 151 FGLPKRAPINSTVLKLLFPVAVCHAIGHVTSTVSFAAVAVSFAHTIKALEPFFNAAASQF 210
Query: 734 LLRQATSSRCILCCAFIIFG 793
+L Q L A ++ G
Sbjct: 211 ILGQQVPLTLWLSLAPVVIG 230
>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
Length = 386
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 581 SMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQ 745
++ M K +P A+M+ + I TN+ L H V + V RS +F + + L Q
Sbjct: 114 NLRTMWKFLPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETLYLHQ 168
>02_01_0410 + 2996779-2997888
Length = 369
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 581 SMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQ 745
++ M K +P A+M+ + I TN+ L H V + V RS +F + L Q
Sbjct: 97 NLRTMWKFLPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETFYLHQ 151
>06_01_0615 -
4454099-4454266,4454366-4454509,4454632-4454790,
4454871-4454981,4455511-4455756,4455871-4455976,
4457180-4457217
Length = 323
Score = 31.9 bits (69), Expect = 0.61
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 551 IFSFPKGTPWSMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLT 703
I K +SM +K++PL+I Y +A LK V +P Y + LT
Sbjct: 61 ILGVSKRKDFSMATGRKLLPLSIFYNANVAFALASLKGVNIPMYIAIKRLT 111
>03_06_0763 +
36081546-36081669,36081755-36082170,36082280-36082339,
36082466-36083101
Length = 411
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -2
Query: 764 YIWTMLPVLIISS*IQH*RLW---SEIFLHNRTVLLHASNTNYLWLSSKYTLLPVESPFS 594
++ T P+ I S+ + + L S LH V L A T++ WL L V PF
Sbjct: 131 FLGTCAPICIYSTLLYYYYLHLPNSNHLLHYLQVRLEAL-TDFCWLCENPQKLVV--PFD 187
Query: 593 *RPYSKVFLLERKIYQ 546
R Y V+ LER+IY+
Sbjct: 188 MRGYQGVYNLERRIYE 203
>06_02_0039 -
10873398-10873680,10874505-10874671,10874807-10874900,
10874988-10875196,10875283-10875434,10876673-10876763
Length = 331
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/80 (22%), Positives = 31/80 (38%)
Frame = +2
Query: 554 FSFPKGTPWSMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWI 733
+ P P + L + + N+ LKH V FY + + T V +I
Sbjct: 113 YLLPIAPPSKSTPFSSLFALGAVMSFSTGLANISLKHNSVGFYQMAKIAVTPTIVAAEFI 172
Query: 734 LLRQATSSRCILCCAFIIFG 793
L ++ S R ++ A + G
Sbjct: 173 LFKKKVSLRKVITLAVVSCG 192
>05_04_0083 +
17780665-17780764,17781070-17781124,17781193-17781313,
17781361-17781429,17782047-17782274,17782477-17782666,
17783303-17783694,17784380-17784427,17784816-17785400
Length = 595
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 472 SIHNLVPVYNFILNLFYIESKWWSSWYIFLSKRNTLEYGRH 594
S H L P Y F+ +LF ++ WW + + E+G H
Sbjct: 15 SPHLLFPFYFFLPSLFCLQGPWWLTGHDLEGSGCVWEWGLH 55
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +1
Query: 457 GS*GASIHNLVPVYNFILNLFYIESKWWSSWYIFLSKRNTLEYGRHEKGDSTGNNVYFDD 636
GS G S+ + + F +ES W W +F + E+G+ G YF++
Sbjct: 22 GSQGVSVSQKIDHGSISFGRFELESLSWEKWSVFSDDKRHEEFGKF-NGLVAQKKAYFEE 80
Query: 637 SHK 645
++
Sbjct: 81 YYR 83
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 758 WTMLPVLIISS*IQH*RLWSEI-FLHNRTVLLHASNTNY 645
W LP ++S+ + L I FLH TV+ H + TNY
Sbjct: 14 WRFLPRRLVSTVMPSVTLLPRILFLHPTTVMFHMNRTNY 52
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 28.7 bits (61), Expect = 5.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 484 LVPVYNFILNLFYIESKWWSSWYIFLSKRNTLE 582
++ + + NL+ ++ WW++ YI L +LE
Sbjct: 180 MLSLETIVFNLYLLDLSWWNASYIILKPYESLE 212
>04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547
Length = 751
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +2
Query: 551 IFSFPKGTPWSMD--VMKKVIPLAIMYTLMIATNNLC----LKHVGVPFYYVGRSLTTVF 712
+F FP +P S M K+ + I+ L+IA +++ LK++ Y + + F
Sbjct: 97 LFFFPSKSPSSCTNTPMAKLAVIYIVLGLIIAADDMMYTGGLKYLPASTYSLICASQLAF 156
Query: 713 NVVFSWILLRQ 745
NVVFS++L Q
Sbjct: 157 NVVFSYVLNSQ 167
>01_04_0054 - 15456668-15459691
Length = 1007
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +2
Query: 530 QNGGVPGIFSFPKGTPWSMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYY--VGRSLT 703
+ G+PG FS+P + D + V A+ + + G+P YY + R T
Sbjct: 484 KKSGIPGNFSYPDPEFFDFDRCRDVSMFAVDQIWALYDD-----RDGMPRYYARIRRIDT 538
Query: 704 TVFNVVFSWI 733
T F V F+W+
Sbjct: 539 TNFRVQFTWL 548
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 517 FYIESKWWSSWYIFLSKRNTLEYGRHEKGDSTGNNVYFDDSHK 645
F +ES W W +F + R E+G+ G YF++ K
Sbjct: 40 FELESLAWEKWSVFANDRRHEEFGKF-NGLVAKKKAYFEEYFK 81
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 574 CSFWKGKYTRNSTILTQCKTN*E 506
C+ WKG Y N+T L+ C N E
Sbjct: 435 CNLWKGAYRCNTTQLSGCTYNRE 457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,389,839
Number of Sequences: 37544
Number of extensions: 380145
Number of successful extensions: 784
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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