Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17o06r
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.5  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    23   3.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   4.7  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   6.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 606  DLMTVAGYKSVSKSKYFV-VAVHSPVKSTSTNLLGLFW 716
            ++M  AG    S   Y V V VH P +S S  +L L W
Sbjct: 1176 EMMREAGRGIESAKSYVVDVRVHVPGESESETVLTLAW 1213


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 532 FGNLKCKFKIGEESFEYTL 476
           F N + KFK+GEE  E T+
Sbjct: 58  FKNTEIKFKLGEEFEEETV 76


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = -3

Query: 562 KTAHQSHYEQFGNLKCKFKIGEESFEY---TLPSFRDHSFGHKRD 437
           KT   SH E  G++ C     EE       T P + +H +G   D
Sbjct: 52  KTLISSHDELPGHINCDSSKFEEDLMNKLPTTPEYNNHLYGSTPD 96


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 671 VDSHYEIL*FRHRFVSCD 618
           +DS+  +L  RHR V+CD
Sbjct: 48  MDSNEPLLPLRHRRVTCD 65


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 19  RIVFRNTFRPTIGMS 63
           R  F  TFRPT GM+
Sbjct: 67  RTDFTTTFRPTAGMT 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,813
Number of Sequences: 438
Number of extensions: 6056
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)