Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17o06f
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    29   0.49 
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    28   1.1  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   3.4  
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|...    26   6.0  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   7.9  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   7.9  

>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +3

Query: 159 LKYVVFGALYYYRKYSSKNSAAGNDGRAGQGVKAIADPADMERAQPLSDHAKAFDAIFFI 338
           +K  +FG +    K+ +++ A         G+ A+    D+ERA  +SD  +A   + FI
Sbjct: 393 VKEEIFGPVVAISKFKTEDEAIEKANNTTYGLAAMCFTKDLERAHRVSDELEA--GMVFI 450

Query: 339 SSKSEN 356
           +S +EN
Sbjct: 451 NS-TEN 455


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 147 KWYYL-KYVVFGALYYYRKYSSKNSAAGNDGRAGQGVKAIADPADMERAQPLSDHAKA 317
           KW  L K     ++  Y K S+ +SA+GN     +   ++A  AD+E  +P  + A A
Sbjct: 267 KWEALVKSPANNSVNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALA 324


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -1

Query: 415 PLHIPIGLCSQPLMMYTPFPFSLFDDIKNMASKALAWSLNG--CARSMSAGSAMALTPCP 242
           P HIP+G  S PL     +  S  DDIK+ A      SL     A+S S  ++  L P  
Sbjct: 537 PSHIPLGTASLPL-KGNLYQISRSDDIKSGAPVLDTSSLVNPTLAKSASLNNSSLLNPSS 595

Query: 241 A--RPSLPAAEFLL 206
           +  R  +PA +  +
Sbjct: 596 SLLRREVPAGKLTM 609


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 195 RKYSSKNSAAGNDGRAGQGVKAIADPADME 284
           + YS     + N  ++GQ + A+A+ AD+E
Sbjct: 208 KSYSENQKISKNKEKSGQSLAALAEEADLE 237


>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 272 WIGYGLNALPGPTIITGSRI 213
           WIG G+  LPG TI  GS I
Sbjct: 158 WIGMGVIVLPGVTIGEGSVI 177


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 257 LNALPGPTIITGSRIL-T*ILSVIIKS 180
           L+ LP P +ITG RI  T ++  IIKS
Sbjct: 687 LDELPAPQVITGPRIQPTKLIDHIIKS 713


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -3

Query: 557 IPLLHRFNRCHLDPFS-AEL 501
           IP++ R NRCHL+  S AEL
Sbjct: 193 IPIMVRSNRCHLEGLSPAEL 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,116
Number of Sequences: 5004
Number of extensions: 62763
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)