Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17o06f
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0174 + 21509202-21509690,21509696-21510133,21510176-21510643 38 0.008
07_01_0699 - 5276790-5278826 34 0.13
07_01_0696 - 5261008-5263128 34 0.13
07_01_0690 + 5221957-5223951 32 0.38
05_03_0520 + 14956476-14958179 32 0.38
07_01_1103 + 10141766-10143583 31 0.89
05_03_0624 - 16319364-16320581 30 1.5
05_03_0599 + 16026042-16027259 30 1.5
01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878 30 2.0
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 29 2.7
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 29 3.6
09_06_0196 - 21481662-21481720,21481898-21483245 28 6.2
06_03_1290 - 29023265-29023469,29023762-29023983,29024097-29025262 28 6.2
06_03_1000 - 26778993-26779478 28 6.2
07_01_0949 - 7988212-7989336 28 8.3
07_01_0870 - 7216124-7216141,7216464-7216676,7217302-7217475,721... 28 8.3
>03_05_0174 + 21509202-21509690,21509696-21510133,21510176-21510643
Length = 464
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 249 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 365
GV ADP + PL+DH + +A FF ++++NGKG
Sbjct: 38 GVIVDADPLSVPPWTPLADHTRGDEAFFFAGARAKNGKG 76
>07_01_0699 - 5276790-5278826
Length = 678
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 249 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 365
GV ADP + L+DH + DA FF ++++NGKG
Sbjct: 40 GVILDADPLCAPPWRLLADHGRGDDAFFFAEARAKNGKG 78
>07_01_0696 - 5261008-5263128
Length = 706
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 249 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 365
GV ADP + L+DH + DA FF ++++NGKG
Sbjct: 40 GVILDADPLCAPPWRLLADHGRGDDAFFFAEARAKNGKG 78
>07_01_0690 + 5221957-5223951
Length = 664
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 249 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 365
GV ADP + L+DH + +A FF ++++NGKG
Sbjct: 40 GVILDADPLCAPPWRLLADHGRGDEAFFFADARAKNGKG 78
>05_03_0520 + 14956476-14958179
Length = 567
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 249 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 365
GV ADP + L+DH + +A FF + ++NGKG
Sbjct: 38 GVILEADPLSAPPWKLLADHGRGDEAFFFAEAHAKNGKG 76
>07_01_1103 + 10141766-10143583
Length = 605
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 249 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 365
GV ADP + + L++H + + FF ++++NGKG
Sbjct: 42 GVILEADPLSVPPWKLLAEHGRGDEGFFFAEARAKNGKG 80
>05_03_0624 - 16319364-16320581
Length = 405
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +3
Query: 243 GQGVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKGVYIISGCEQRPMGMCNGLF 422
GQ + ADP +DH + +A F ++++N KG S E + M + G
Sbjct: 35 GQPLPLEADPLSARPRNLAADHGRGDEAFFLAEAQAKNAKGKRQRSTVEGQSMCVDGGRL 94
Query: 423 YIGLPGKG 446
+ G+G
Sbjct: 95 RVPDDGRG 102
>05_03_0599 + 16026042-16027259
Length = 405
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +3
Query: 243 GQGVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKGVYIISGCEQRPMGMCNGLF 422
GQ + ADP +DH + +A F ++++N KG S E + M + G
Sbjct: 35 GQPLPLEADPLSARPRNLAADHGRGDEAFFLAEAQAKNAKGKRQRSTVEGQSMCVDGGRL 94
Query: 423 YIGLPGKG 446
+ G+G
Sbjct: 95 RVPDDGRG 102
>01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878
Length = 474
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 561 SYKGQMWYQNNPSKFVDVDFTGEWTATTKYFDFDTDLYPA 680
SY +YQ N + V DF G TTK +DT +Y A
Sbjct: 410 SYAFNSYYQQNGANDVACDFGGTGVRTTKDPSYDTCVYMA 449
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 703 LAIDLMTVAGYKSVSKSKYFVVAVHSPVKSTSTNLLGLFWYHIC 572
LA+D++TV V+++K VV V+ N G WY C
Sbjct: 968 LAVDVVTVVVESRVARAKETVVLVYLKCYRKQLNFCGNKWYSKC 1011
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 195 RKYSSKNSAAGNDGRAGQGVKAIADPADMERAQPLSDHA 311
++ K + A GRAGQ + D D P SDH+
Sbjct: 1146 KEMQKKQARAKIKGRAGQNPSEVVDDEDQRSPPPKSDHS 1184
>09_06_0196 - 21481662-21481720,21481898-21483245
Length = 468
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 676 GYKSVSKSKYFVVAVHSPVKSTSTNL-LGLFWYHICPL 566
G VS F + SP STS+NL LG+++ I PL
Sbjct: 36 GSTVVSNGGAFALGFFSPTNSTSSNLYLGIWYNDISPL 73
>06_03_1290 - 29023265-29023469,29023762-29023983,29024097-29025262
Length = 530
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 566 VRDIPLLHRFNRCHLDPFSAELSYF 492
V + L HRF H+ PF +LSYF
Sbjct: 24 VNFVVLAHRFIALHIHPFWIQLSYF 48
>06_03_1000 - 26778993-26779478
Length = 161
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 325 ASKALAWSLNGCARSMSAGSAM-ALTPCPARPSLP 224
A+ A+ S +GC SAGSA+ T CP P P
Sbjct: 65 AAAAVVESSDGCVTPTSAGSALRPATVCPPAPRKP 99
>07_01_0949 - 7988212-7989336
Length = 374
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 249 GVKAIADPADMERAQPLSDHAKAFDAIFFIS-SKSENGKG 365
GV ADP + + L+DH + D FF++ + ++N KG
Sbjct: 40 GVVLDADPLSAQPWRLLADHGRGGDEAFFLAEAHAKNAKG 79
>07_01_0870 -
7216124-7216141,7216464-7216676,7217302-7217475,
7218105-7218152,7218339-7218474,7218516-7219075
Length = 382
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 620 EVHIDKLTGVVLVPHLSLVRDIPLLHRFNRCHLDPFSAELS 498
E+ +T + V L D PLLHR C DP E++
Sbjct: 52 ELRFPAVTDLARVTAALLSHDAPLLHRLELCSHDPAPHEVA 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,153,977
Number of Sequences: 37544
Number of extensions: 408786
Number of successful extensions: 1096
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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