Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17o06f
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047651-6|AAC02725.3|  426|Caenorhabditis elegans Hypothetical ...    67   1e-11
AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and cap...    42   4e-04
Z93398-9|CAN99698.1| 1497|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z92788-9|CAN99699.1| 1497|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    32   0.46 
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr...    31   0.80 
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr...    31   0.80 
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z81506-7|CAB04127.1|  676|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family p...    28   5.6  

>AF047651-6|AAC02725.3|  426|Caenorhabditis elegans Hypothetical
           protein C05D2.8 protein.
          Length = 426

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 64/229 (27%), Positives = 97/229 (42%), Gaps = 27/229 (11%)
 Frame = +3

Query: 96  FKLK-DRKPIFGIYAVPGKWYYLKYVVFGALYYYR--KYSSKNSAAGNDGRAG------Q 248
           F LK D   + GIY  PGKWY+LK+ +   +   R  K +SK+ +   D +         
Sbjct: 17  FILKPDPVKLLGIYGQPGKWYFLKFNLMRFVIDRRQKKQNSKSKSHKEDNKENLMNSQWG 76

Query: 249 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKGVYIISGCEQRPMGMCNGLFYI 428
           G     D  +ME+   +     A DA+FF +S   N  G YI  G  QRP  + N  F +
Sbjct: 77  GDGGERDIVEMEKKHDMKQDWSA-DAVFFDAS---NRDGWYITLGTAQRPNNIINLFFIL 132

Query: 429 GLPGKGLLCSKKI-PDTVLXXXXXXXXXXXXXK---MTPVEPMKKWNISYKGQM------ 578
            +P  G   ++++  DT +                 ++ +EPMKKW I + G++      
Sbjct: 133 RIPEIGTFVNEELHTDTNVKSIQCPEKEWKTESGFIVSCIEPMKKWRIQFNGKLASAPGK 192

Query: 579 --WYQNNPS------KFVDVDFTGEWTATTKYFDFDTDLYPATVIRSIA 701
             + +N         K  D +F   WT     FDFD    P  +  S+A
Sbjct: 193 INFIKNGSEEMKDGIKIFDANFDLTWTNFGNQFDFDKMCSPTAIAHSLA 241


>AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 4 protein.
          Length = 756

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
 Frame = -3

Query: 548 LHRFNRCHLDPFSAELSYFSSKKDCVRYLLAAEKTFSWESDIKQSVAH--SH-RSLFAAA 378
           LH  NR +L P +  L+ F +KK+ ++ ++  E+T +W     QS A+   H  S+   +
Sbjct: 282 LHIQNRQNLTPLT--LAAFLAKKEMMQRIVEEERTVNWTYGRTQSAAYPLEHVDSIEPTS 339

Query: 377 NDVYALSVFTFR*YKEYGIESLSMVAQWLCSL-HVSWIGYGLNAL 246
             +   SV T   Y E  +E LS++   L  L H  WI YG   L
Sbjct: 340 GSINQKSVLTIAVYGE-KVEHLSLLPHLLEQLVHHKWIAYGRKTL 383


>Z93398-9|CAN99698.1| 1497|Caenorhabditis elegans Hypothetical
           protein ZK1151.1i protein.
          Length = 1497

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 189 YYRKYSSKNSAAGNDGRAGQG 251
           YY +YSS+N AAG +G  G G
Sbjct: 218 YYEEYSSRNGAAGGNGHVGNG 238


>Z92788-9|CAN99699.1| 1497|Caenorhabditis elegans Hypothetical
           protein ZK1151.1i protein.
          Length = 1497

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 189 YYRKYSSKNSAAGNDGRAGQG 251
           YY +YSS+N AAG +G  G G
Sbjct: 218 YYEEYSSRNGAAGGNGHVGNG 238


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
            protein Y108G3AL.7 protein.
          Length = 1192

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 589  TTPVSLSMWTSPESGQPLRNTLISTQICILRPSSGQ*P 702
            TTPVS      P+ G+P +NT ++T +  +  S G+ P
Sbjct: 922  TTPVSSMAAAPPKKGRPRKNTTVTTPVLSVPKSEGRGP 959


>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
           protein T14E8.1c protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 516 LQRRTLLFQLQKGLCPVSSCCREDLFLGVRYKTVRCTFPSVF 391
           L  R  +  ++K    + S C+E  F G   KT RC +P +F
Sbjct: 306 LMCRFKMANIEKRFKTIWSTCQETSFSGSTAKTTRCKYPQIF 347


>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
           protein T14E8.1b protein.
          Length = 1030

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 516 LQRRTLLFQLQKGLCPVSSCCREDLFLGVRYKTVRCTFPSVF 391
           L  R  +  ++K    + S C+E  F G   KT RC +P +F
Sbjct: 306 LMCRFKMANIEKRFKTIWSTCQETSFSGSTAKTTRCKYPQIF 347


>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
           protein T14E8.1a protein.
          Length = 1086

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 516 LQRRTLLFQLQKGLCPVSSCCREDLFLGVRYKTVRCTFPSVF 391
           L  R  +  ++K    + S C+E  F G   KT RC +P +F
Sbjct: 306 LMCRFKMANIEKRFKTIWSTCQETSFSGSTAKTTRCKYPQIF 347


>Z81506-7|CAB04127.1|  676|Caenorhabditis elegans Hypothetical
           protein F16H6.9 protein.
          Length = 676

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 551 LLH--RFNRCHLDPFSAELSYFSSKKDCVRYLL 459
           L+H  +FN CH  PF   LS+F  KKD +   L
Sbjct: 541 LIHAKQFN-CHRKPFIEPLSHFDEKKDVITEFL 572


>U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family
           protein 35 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 167 CRFRSSLLLQKVFK*EFGC 223
           C+++ +LL+QKVF+  FGC
Sbjct: 148 CKYQPTLLIQKVFRDCFGC 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,313,694
Number of Sequences: 27780
Number of extensions: 349332
Number of successful extensions: 953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)