Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17o06f
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   3.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 694  DLMTVAGYKSVSKSKYFV-VAVHSPVKSTSTNLLGLFW 584
            ++M  AG    S   Y V V VH P +S S  +L L W
Sbjct: 1176 EMMREAGRGIESAKSYVVDVRVHVPGESESETVLTLAW 1213


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 629 VDSHYEIL*FRHRFVSCD 682
           +DS+  +L  RHR V+CD
Sbjct: 48  MDSNEPLLPLRHRRVTCD 65


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = -3

Query: 377 NDVYALSVFTFR*YKEYGI----ESLSMVAQWLCSLHVSWI 267
           ND Y + V+ F   + YGI      +  V   L +L V W+
Sbjct: 236 NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLTVLWL 276


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -2

Query: 216 NSYLNTFCNNKELRKRHILNNTTSPVRRRYQISVCDL 106
           + Y + FCN      + +   T   V RR    +CD+
Sbjct: 352 SDYQDAFCNIVSCSPQTVHPETIIDVSRRRSSLICDV 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,683
Number of Sequences: 438
Number of extensions: 4685
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)