Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17n22f
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    56   4e-09
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   2.1  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    27   3.7  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    26   6.5  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   6.5  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 8/239 (3%)
 Frame = +1

Query: 52  LLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQN-ADIAED--VRQTAAVLLRRLF 222
           L+  L S DN +R+ AE + ++     +   L+N +   A  +ED  VR    VL RR+ 
Sbjct: 16  LVQGLSSPDNTVRNDAEKSLSSDWISQRADLLLNGLAILAYQSEDPAVRSFCLVLCRRIS 75

Query: 223 -----SAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDG 387
                               +  L+ QLL     +    +R K+CD ++E+AR+  D  G
Sbjct: 76  FRTLPGDSELEVFSSISNESKQSLQSQLLACFVKESVPTVRNKLCDTIAEIARSIYDCQG 135

Query: 388 NNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKGMLISALQPNE 567
             +WPE +  +F   ++ D + +E+  R  TS+P +   + +     +  +  + L  + 
Sbjct: 136 --EWPELINVIFNAVNSPDESFRESVFRTITSLPRLLSGQDS----AVTPLFTTGL-ADP 188

Query: 568 SMALRTQAVKAVGAFILLHDKEPIIQKHFSDVLLPLMQVIVLSIEAADDDSALKVLIEL 744
           S+ +R  A +A  A IL  + +   +     +L  LM ++    +  D D+    L+ +
Sbjct: 189 SIRVRISAARAYSAVIL--ESKQSTRDQVIPLLPSLMNILPPLQQDRDSDNLADCLMAI 245


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 132 CFCWNVVVCVLCL 94
           CF W++ +C+LCL
Sbjct: 215 CFLWSIYICLLCL 227


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 420 VYLCQCARSKHQRSWY*NVYICTRCIWK 503
           ++LC+   S H RS+  ++ +C +C+ K
Sbjct: 243 IFLCKVLESSHLRSFAEDLSMCFKCVKK 270


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 409 LQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKGMLISALQPNESMA 576
           LQF+F   +A+DP  KEA   +     G     +T     +KG L++ +  +  MA
Sbjct: 126 LQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRT----AMKGGLVNGISFDNVMA 177


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 64  LLSTDNDIRSQAEDAYNNIP-TETKVVHLVNSIQNADIAE 180
           L S  ++IR    D YNNIP ++T    +  +I  A I E
Sbjct: 99  LNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILE 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,889
Number of Sequences: 5004
Number of extensions: 62346
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)