Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17n21f
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 37 0.004
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 2.3
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.0
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 26 5.2
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 5.2
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 6.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 6.9
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 26 6.9
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p... 26 6.9
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 411 LKLYQNKENTIVPLHWFGVLVPQNLHMAQKIFQTTLSYVVECSNIQLQLEE-NMKNINAL 587
L+LY + IVP W G + + + K F T L + C + ++E N++NI+ +
Sbjct: 35 LRLYHELISVIVPTFWNGKINSEIDFLLAKCFSTLLGLKLLCVRLDNFVQEANLQNIHLV 94
Query: 588 RKYLNIISKS 617
YL ++ K+
Sbjct: 95 TVYLELLEKA 104
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 261 NVNNGSIHLAKSRYIMGQSSVSTTKLPT 344
N + + +KSRY+ G S+STT L T
Sbjct: 424 NSSRFGAYFSKSRYVEGSGSMSTTPLAT 451
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = +3
Query: 216 DLLEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASIMCKTIEE 395
D+L QKI L + SN NN + + + + + T F ++I+ ++ +
Sbjct: 306 DILSQKISSVLEVLSNNNNSNNNNGNNGTVPNAKTFFTPPSSITQQVPFPSTIIPESTVK 365
Query: 396 DGMTK----LKLYQNKENTIVPLHWFGVLVP 476
+ T+ L N + T P H V+ P
Sbjct: 366 ENSTRPYVNSHLVANDKITATPFHSEAVVSP 396
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 234 FFALKGQVVSKLLYPINRELVQYLTWCNVDCREILTYITLNC*GKIKMVYSTFSI 70
FFA K L Y I+ L Q L W V+ R + + L C ++V S ++
Sbjct: 278 FFAAKSDTPVNLEY-ISVVLNQILDWTPVELRHSIFFCCLRCLSSSRIVNSETNV 331
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 360 FSASIMCKTIEEDGMTKLKL 419
F+ + C T+ EDG+TKL L
Sbjct: 72 FACTFKCFTMTEDGLTKLNL 91
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 549 LQLEENMKNINALRKYLNIISK 614
L+LEE K +N + KY+ ++ K
Sbjct: 101 LELEEQNKCLNTVNKYMEVVKK 122
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 216 DLLEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESS 353
D+ + IK ++N ESN +NG + + + Q+ KLP++++
Sbjct: 987 DVSQSDIKVDINRESNSDNGET-ITGTHDVYRQTDNPEIKLPSDTA 1031
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 554 TRRKHEEHKRSEKIFKHYFKKLKF 625
T+ + EH+ +EK +H+F+ KF
Sbjct: 165 TKAEEAEHQENEKHHRHHFRLRKF 188
>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 111
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +3
Query: 315 SSVSTTKLPTE--SSPDFSASIMCKTIEEDGMTKLKLYQNKENTIVPLHWFGV 467
SS KLP + S +A C E+DGMT +K + ++ + W +
Sbjct: 59 SSTLVQKLPEDHPSRGVHAAHAACWNCEKDGMTTIKESGEAIDVVLSIMWISI 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,427
Number of Sequences: 5004
Number of extensions: 61373
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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