Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17n20r
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 709 KILDRK*PIHYAMKIKCLISPTQVALKRHRYHLSMITRI 593
           K+ D K    YA+  K + +PT+ +      H+S+  ++
Sbjct: 131 KMSDEKISTLYALGAKIIRTPTEASWHSPEAHISVAQKL 169


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 195 NYF*NCYVFFNSLSYYLDVYFYCNIFAFFCLFC 97
           N   N Y  F+S    LDVY    I   +C+ C
Sbjct: 514 NMLQNLYEQFDSFCGQLDVYKVETIGDAYCVAC 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,983
Number of Sequences: 438
Number of extensions: 4963
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)