Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17n20f
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 88 1e-18
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 32 0.068
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 28 1.1
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.6
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 27 3.4
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 27 3.4
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 26 4.5
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 26 5.9
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.8
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 25 7.8
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 87.8 bits (208), Expect = 1e-18
Identities = 61/169 (36%), Positives = 88/169 (52%), Gaps = 11/169 (6%)
Frame = +2
Query: 170 GLFNKPELTTFE-GFYTLKDQAIEATDRLIEEATNSPTRP---MVEIFDELSDTLCKVAD 337
GLF L+ + GF L + A E +IE+ T +V FD +S+ LC V D
Sbjct: 65 GLFRNHFLSDKDTGFLRLAETASEKCKAVIEDLLLEDTEDGSIVVSKFDRISNLLCSVID 124
Query: 338 LAEFVRIAHPQPHFARAAEEACISISGVVEKLNTHKGLYEALKKSVE-----NGTSGDKH 502
L EFVR AHP AEEA + ++ LNTH+GLYE LK S++ T + +
Sbjct: 125 LFEFVRCAHPDKMVVMKAEEAYSYLFELMNTLNTHQGLYEKLKCSLQQTPTLKDTDPEAY 184
Query: 503 -LAELFLFDFEQSGIHLEENKRKSVVALNDVILQTGQRFMAGAA-KPRR 643
+ +FL DFE+SG++LE +KR S V + G+ F + +P+R
Sbjct: 185 TVGRVFLQDFEKSGVNLESSKRNSFVKKSSESATLGRAFFNNSMNRPQR 233
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 32.3 bits (70), Expect = 0.068
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 218 LKDQAIEATDRLIEEATNSPTRPMVEIFDELSDTLCKVA 334
LK+ ++E+ D LIE + SPT + + + +L DTL ++
Sbjct: 630 LKNDSVESYDWLIEYGSQSPTSEVTDRYKKLDDTLKSIS 668
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 468 FFKASYKPLCVFNFSTTPLMLIQASS 391
FF+A Y+PL + FS ++L AS+
Sbjct: 113 FFRAHYQPLTILKFSNDGMVLFTASN 138
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 182 KPELTTFE-GFYTLKDQAIEATDRLIEEATN 271
K E TT + GF+ + DQAI +T R+ E N
Sbjct: 60 KNETTTVDVGFFGVCDQAINSTSRVCHELRN 90
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 158 KERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEEATNSPTR 283
+E T L + P + E +LKD+ I+A + IE+ TN P +
Sbjct: 54 RELTSLHDAPTIVANE---SLKDRDIDAIYQNIEKTTNKPAQ 92
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 376 MWLGVSYPHKLSKICNFAQCVGKLIKYL 293
+W+ P K C F+QC+ K+ +L
Sbjct: 324 LWVSKYAPSKTQDCCAFSQCLSKIADWL 351
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 548 LEENKRKSVVALNDVILQTGQ-RFMAGAAKPRRVSRSAVPQNVR 676
L++ +K V L D + +FMA P V + AVP N+R
Sbjct: 280 LQDEYQKLVRGLQDANAANDEDQFMANPVLPEDVLKEAVPGNIR 323
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +2
Query: 131 NSRPIFDSLKERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEEATNSPTRPMVEIFDEL 310
NSRP + T + PEL + +Y+ A E AT P P + FD+L
Sbjct: 192 NSRPPYTEYVS-TRWYRAPELLLRDSYYSFPVDIYAAGCMAFEIATLQPIFPGNDDFDQL 250
Query: 311 SDTLCKV 331
+C++
Sbjct: 251 Y-KMCEI 256
>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +2
Query: 221 KDQAIEATDRLIEEATNSPTRPMVEIF---DELSD-TLCKVAD 337
+ Q+I++TD T S R +EIF DEL D ++C D
Sbjct: 113 RSQSIQSTDSKQRVETQSHRRSKIEIFDAQDELFDRSICTTID 155
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 474 TDFFKASYKPLCVFNFSTTPLMLIQASSA-ARAKCGW 367
T FFK+ ++P+ VF L +I A R+ GW
Sbjct: 907 TKFFKSIFRPMNVFVLKVGTLAVICTIPAFCRSSAGW 943
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 449 LYEALKKSVENGTSGDKHLAELFLFDFEQSGIHLEENK 562
L++ALKK EN GD LA + +S +++E N+
Sbjct: 138 LFDALKKHCENNVKGDWWLAS---GHYAKSVVNIETNE 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,645
Number of Sequences: 5004
Number of extensions: 60971
Number of successful extensions: 217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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