Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17n20f
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 44 1e-04
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 31 0.66
05_01_0127 - 863755-865182 31 0.66
05_01_0124 + 852358-853257 31 0.66
06_01_0354 - 2550061-2551033,2551125-2551385,2553079-2553274,255... 30 2.0
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 29 3.5
09_06_0294 + 22089915-22091333 29 3.5
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686... 29 3.5
01_01_0900 + 7091970-7092068,7092175-7093131,7093210-7093968,709... 29 3.5
08_01_0984 - 9952630-9954132 28 6.2
02_01_0027 - 168684-169289 28 6.2
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 28 8.1
02_02_0485 + 10853712-10854686 28 8.1
02_02_0231 - 8091431-8092900 28 8.1
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +2
Query: 377 FARAAEEACISISGVVEKLNTHKGLYEALKKSVENG---TSGDKHLAELFLFDFEQSGIH 547
F A++A + I ++ LNT+ LY A+ K+ G T + A DFE+ GIH
Sbjct: 51 FMDEADKASMRIYEHLQYLNTNTTLYNAILKAESEGVMLTEEARRAATTLRVDFEKGGIH 110
Query: 548 LEENKRKSVVALNDVILQTGQRFMA 622
L ++K + V LN I Q G+ M+
Sbjct: 111 LPKDKLEHVNHLNLEIAQLGRNCMS 135
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 31.5 bits (68), Expect = 0.66
Identities = 19/83 (22%), Positives = 40/83 (48%)
Frame = +3
Query: 363 TPNHISHELLKKPVSALVELSKS*TRTKACTKL*RSQLRMEHLETNI*QNYSCSTLNRAE 542
+PN+++ ++ +P + LV S + T C KL S L ++ ++ YS LN+
Sbjct: 374 SPNNVADKVTSQPHAQLVRPSPAENHTVNCDKLNNSDLAIDEGTISLSSQYSQELLNKLN 433
Query: 543 YTSKRTKGRVWWLSMMLSSKLGR 611
+ + + + S+ + LG+
Sbjct: 434 HALENSGIDLSQASISVQINLGK 456
>05_01_0127 - 863755-865182
Length = 475
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 394 FSSSCEMWLGVSYPHKLS-KICNFAQCVGKLIKYLDHRTRGAVGGLF 257
FS E + V P +LS ++C+ A G L D+R G V GLF
Sbjct: 275 FSIGAEQFGSVYVPPRLSSRMCHLANLDGSLCAVFDYRGAGGVYGLF 321
>05_01_0124 + 852358-853257
Length = 299
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 394 FSSSCEMWLGVSYPHKLS-KICNFAQCVGKLIKYLDHRTRGAVGGLF 257
FS E + V P +LS ++C+ A G L D+R G V GLF
Sbjct: 95 FSIGAEQFGSVYVPPRLSSRMCHLANLDGSLCAVFDNRVEGDVYGLF 141
>06_01_0354 -
2550061-2551033,2551125-2551385,2553079-2553274,
2553443-2553632,2553750-2553983
Length = 617
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +2
Query: 329 VADLAEFVRIAHPQPHFARAAEEACISISGVVEKLNTHKGLYEALKKSVENGTSGDKHLA 508
+ADLA R +HP P R+ + S+S + LN H G S +GT +
Sbjct: 15 LADLAR--RRSHPPPGGGRSGDSLAASVSSLAAALNPHGG---GASSSSSSGTRVLDAVL 69
Query: 509 ELFLFD 526
L FD
Sbjct: 70 SLMCFD 75
>12_02_0858 + 23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 566 KSVVALNDVILQTGQRFMAGAAKPRRVSRSAVP 664
K VVA D ++ G+R MA +PRR + VP
Sbjct: 1151 KHVVARLDRLIDIGERKMANPRRPRRHGKDPVP 1183
>09_06_0294 + 22089915-22091333
Length = 472
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 394 FSSSCEMWLGVSYPHKLS-KICNFAQCVGKLIKYLDHRTRGAVGGLF 257
FS E + V P +LS +IC+ A G L D+R G V GLF
Sbjct: 286 FSIGGEQFGWVYVPPRLSSRICHLADLDGSLCAVYDNRLFGRVYGLF 332
>03_05_0026 +
19966616-19966703,19967992-19968058,19968599-19968677,
19969140-19969231,19969961-19970396,19973749-19974099
Length = 370
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 401 CISISGVVEKLNTHKGLYEALKKSVENGTSGDKHLAELF--LFDFEQSGIHLE 553
CI++ VE K LYE LK S E T + L E L Q G H++
Sbjct: 240 CIALQAKVEDKGKSKVLYEELKTSRERLTISHEKLKEAHDNLLSTTQHGAHID 292
>01_01_0900 +
7091970-7092068,7092175-7093131,7093210-7093968,
7094322-7094366
Length = 619
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +2
Query: 143 IFDSLKERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEEATNSPTRPMVEIFDELSDTL 322
+FD + E G+ P++ + ++ Q E + L+ + RP V F +
Sbjct: 388 VFDKMIE-AGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGW 446
Query: 323 CKVADLAEFVRI 358
C VAD+ VR+
Sbjct: 447 CSVADMGNAVRV 458
>08_01_0984 - 9952630-9954132
Length = 500
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 581 LNDVILQTGQRFMAG--AAKPRRVSRSAVPQNVRHFFST 691
L DV+ +G F A AA R+ + P NVRH F+T
Sbjct: 60 LTDVLAASGHSFTAHGPAATNMRLFVTCEPDNVRHIFTT 98
>02_01_0027 - 168684-169289
Length = 201
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 302 DELSDTLCKVADLAEFVRIAHPQPHFARAAEEACISISG 418
D + T+CK+ DLAE P ARA E C+ G
Sbjct: 93 DHATSTVCKMDDLAELEPEDSSSPSDARARFEHCLEQYG 131
>03_05_1149 +
30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 10 RESYNEVIETPLDPPKWQKEEIGMLCQYLVTFGNSIQHQTKFQ 138
+E Y+ V+ +WQ E + +LC +L G+S++ Q +FQ
Sbjct: 79 KEMYSNVVNLLFHGIEWQTEGVQLLCSFLGP-GSSVK-QVEFQ 119
>02_02_0485 + 10853712-10854686
Length = 324
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 507 QNYSCSTLNRAEYTSKRTKGRVWWLSMMLSSKLGRGSWPE 626
Q+Y+ TL R SKR RVWW S L G+W +
Sbjct: 92 QSYTVVTLVR----SKRVDWRVWWEFFAKVSVLRAGAWDD 127
>02_02_0231 - 8091431-8092900
Length = 489
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +2
Query: 125 RPNSRPIFDSLKERTGLFNKPELTTFEGFYTLKDQAIEATDRLIEEATNSPTRPMVEIFD 304
R ++ P++ L E L+ FY L+ A+E + + E+ T P P+
Sbjct: 202 RDSTAPVYGQLVETGRLYRGAAGFLANSFYELEPAAVEDSKKAAEKGTFPPAYPVGPFVR 261
Query: 305 ELSD 316
SD
Sbjct: 262 SSSD 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,243,845
Number of Sequences: 37544
Number of extensions: 392545
Number of successful extensions: 1209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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