Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17n20f
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.91 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.91 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.91 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 77  GCSVSTWSPLATAFNTRPNSRPIFDSLKERTGLFNKPELTTFEGFYT 217
           GC V TWSP   A N R     + ++      L  KPE+  +   Y+
Sbjct: 195 GCLVGTWSP-DPAINRR-----LKETYSNMCALCEKPEVCDYPDIYS 235


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 77  GCSVSTWSPLATAFNTRPNSRPIFDSLKERTGLFNKPELTTFEGFYT 217
           GC V TWSP   A N R     + ++      L  KPE+  +   Y+
Sbjct: 195 GCLVGTWSP-DPAINRR-----LKETYSNMCALCEKPEVCDYPDIYS 235


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 77  GCSVSTWSPLATAFNTRPNSRPIFDSLKERTGLFNKPELTTFEGFYT 217
           GC V TWSP   A N R     + ++      L  KPE+  +   Y+
Sbjct: 195 GCLVGTWSP-DPAINRR-----LKETYSNMCALCEKPEVCDYPDIYS 235


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 489 LETNI*QNYSCSTLNRAEYTSKRTKGRVWWLSMMLSS 599
           +E N   N S  +L++ +YT + T   + W + +  S
Sbjct: 370 IEMNEDDNTSLVSLDKKQYTWRHTSVLIGWSAFLCIS 406


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 468 SQLRMEHLETNI*QNYSCSTLNRAEYTS 551
           S L +EHL  +   NYSC   N A   S
Sbjct: 668 SILMIEHLSPDHNGNYSCVARNLAAEVS 695


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -3

Query: 421 NSTNADTGFFSSSCEMWLGVSYPHKLSKICN 329
           N+ N    +   S   WL ++  H   K+C+
Sbjct: 106 NTKNCVNPYDRDSLSCWLQMTKHHNFIKVCS 136


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 549 RCIPLCSKSNKNNSAKCLSPDVPFSTDFFK 460
           + +P C  SNK + ++ L      + DF K
Sbjct: 75  KSLPRCQLSNKRDRSRELIKAAILANDFMK 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,402
Number of Sequences: 438
Number of extensions: 4087
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)